Detail information of GWHGAAZE007555


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN41889.11.3509E-12626S proteasome non-ATPase regulatory subunit 4 [Glycine soja]
Swissprottr|P55034|PSMD4_ARATH5E-11426S proteasome non-ATPase regulatory subunit 4 homolog
trEMBLtr|A0A068U025|A0A068U025_COFCA4E-125Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01880.1}
TAIR10AT4G38630.12E-92regulatory particle non-ATPase 10

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4743962147442084-
GWHAAZE00000002mRNA4743962147442084-
GWHAAZE00000002exon4744207347442084-
GWHAAZE00000002exon4744184047441953-
GWHAAZE00000002exon4744153747441642-
GWHAAZE00000002exon4744060147440715-
GWHAAZE00000002exon4744030347440512-
GWHAAZE00000002exon4743962147439699-
GWHAAZE00000002CDS4744207347442084-
GWHAAZE00000002CDS4744184047441953-
GWHAAZE00000002CDS4744153747441642-
GWHAAZE00000002CDS4744060147440715-
GWHAAZE00000002CDS4744030347440512-
GWHAAZE00000002CDS4743962147439699-
Transcript Sequence

Network for GWHGAAZE007555

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13519.7VWA_261151.50E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03029PSMD4, RPN10 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.461
SRR3591706second leaf17.070
SRR3591707mature leaf9.849
SRR3591708Shoot apex25.146
SRR3591709Stem16.077
SRR3591710White floral bud27.035
SRR3591711White flower25.495
SRR3591712Green floral bud23.483
SRR3591713Yellow flower21.939
SRP173429 SRR8316895Juvenile bud stage 12.366
SRR8316896Juvenile bud stage 18.706
SRR8316897Juvenile bud stage 12.367
SRR8316894Third green stage 3.999
SRR8316900Third green stage 21.721
SRR8316901Third green stage 21.217
SRR8316898Complete white stage 3.454
SRR8316899Complete white stage 21.091
SRR8316903Complete white stage 13.092
SRR8316902Silver flowering stage7.831
SRR8316904Silver flowering stage8.353
SRR8316905Silver flowering stage5.087
SRR8316906Gold flowering stage 22.534
SRR8316907Gold flowering stage 23.927
SRR8316908Gold flowering stage 26.508
SRP132670SRR6706286Control29.681
SRR6706287Light intensity 50%31.102
SRR6706288Light intensity 20%33.784
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.377
CNS0095593Slightly white alabastrum(diploid) 212.812
CNS0095594Slightly white alabastrum(diploid) 39.817
CNS0095595Whole white alabastrum(diploid) 211.258
CNS0095596Whole white alabastrum(diploid) 36.782
CNS0095597Whole white alabastrum(diploid) 46.593
CNS0095598Silvery flower (diploied) 111.452
CNS0095599Silvery flower (diploied) 29.216
CNS0095600Silvery flower (diploied) 323.055
CNS0095601Golden flower (diploid) 18.815
CNS0095602Golden flower (diploid) 214.951
CNS0095603Golden flower (diploid) 315.508
CNS0095604Slightly white alabastrum(tetraploid) 115.746
CNS0095605Slightly white alabastrum(tetraploid) 28.774
CNS0095606Slightly white alabastrum(tetraploid) 340.587
CNS0095607Whole white alabastrum(tetraploid) 111.041
CNS0095608Whole white alabastrum(tetraploid) 25.797
CNS0095609Whole white alabastrum(tetraploid) 322.163
CNS0095610Silvery flower (tetraploid) 121.613
CNS0095611Silvery flower (tetraploid) 220.384
CNS0095612Silvery flower (tetraploid) 316.252
CNS0095613Golden flower (tetraploid) 110.285
CNS0095614Golden flower (tetraploid) 214.873
CNS0095615Golden flower (tetraploid) 315.251
CRA001975CRR073297Stem 125.842
CRR073298Stem 226.227
CRR073299Stem 330.714
CRR073300Leaf 128.113
CRR073301Leaf 224.618
CRR073302Leaf 330.070
CRR073303Juvenile bud 121.014
CRR073304Juvenile bud 225.895
CRR073305Juvenile bud 327.659
CRR073306Third green 110.124
CRR073307Third green 210.857
CRR073308Third green 39.597
CRR073309Second white 118.507
CRR073310Second white 214.624
CRR073311Second white 313.321
CRR073312Silver flowering 19.079
CRR073313Silver flowering 29.002
CRR073314Silver flowering 38.556
CRR073315Gold flowering 18.789
CRR073316Gold flowering 222.126
CRR073317Gold flowering 38.894
CRR073318Tawny withering 117.954
CRR073319Tawny withering 211.858
CRR073320Tawny withering 319.406