Gene detail

Detail information of GWHGAAZE007572

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01876.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068U042\|A0A068U042_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01876.1}
TAIR10	AT2G17840.1	2E-131	Senescence/dehydration-associated protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	47972243	47977736	+
GWHAAZE00000002	mRNA	47972243	47977736	+
GWHAAZE00000002	exon	47972243	47972714	+
GWHAAZE00000002	exon	47973243	47973714	+
GWHAAZE00000002	exon	47974218	47974384	+
GWHAAZE00000002	exon	47976403	47976487	+
GWHAAZE00000002	exon	47977559	47977736	+
GWHAAZE00000002	CDS	47972243	47972714	+
GWHAAZE00000002	CDS	47973243	47973714	+
GWHAAZE00000002	CDS	47974218	47974384	+
GWHAAZE00000002	CDS	47976403	47976487	+
GWHAAZE00000002	CDS	47977559	47977736	+

Transcript Sequence
>GWHTAAZE007580 ATGGCCTCTCAACAAAACCCTAAAACCAGAACCCCATTATACCCCCAAATCATCGATTCAAATCCAGAAACTTCCTCCCCGTTTCTCTCAAACCCTAACCAATCATCTTCTTCCTCACTCTACCCCACAATTGACCCTAAGGATCTCAATTCTAACCTATTCCCACAAAATTACCAAAATACCCCTCACCAAACTACTAATCCCCGATCAGCCCCGCCGGAGCCGGTCGAAGAGATCCTCCTCTCAATCCCCGGATCAATCCTCCACTTGATCGATCGGCAGCACAGCGTCGAGCTTTCTAGTGGCGATCTGTCGATAATCTGGCTCCGGGAGGGGAATAATGTCGTCACTGTTTTGGCACGTGTTGGAGATGAGATCCAGTGGCCGTTGGCGAAGGATGTAGCGGTTGTAAAGCTTGATCACTCTCACTATTTCTTCTCGTTCAGATTTCCTGGTTCTAGTGATGAAGAAGGACCAAAGGGGTCGAAAATTGATTCAAATATGTTATTGAACTACGGACTGACAATTGCGTCAAAGGGACAGGACAAGTTATTGGGAGATTTAGATTCGGTTTTGGAGAATTACTGTAACTTTTCGGTGCAGAAAGTGGAAAAGGGAAAAGGGAAGGGGAAAGAGGTGGAAGTTGTGGATGGGGAAATTGCCAAGGAGTTTTCTCCGGCGGATTTGAAATCAGAGAAGAAGAGGGAAGTGATGGAGACGAGGTGTCGGGCTTATTGGACAACATTGGCACCAAATGTGGAGGATTATAGTGGGACTGCAGCGAAGCTGATTGCAGCCGGATCGGGGCAGTTGATTAAAGGAATTTTGTGGTGTGGTGATGTGACTGTGGAGAGGTTGAATTGGGGGAATGAGGTATTGAAGAAGAGGATGACCCCTGGTTCTAAGGCTGAGATTAGTCCTGATACTTTGAAGAGGATTAAAAGGGTGAAGAGGGTGACCAAAATGACGGAAAAGGTAGCAAAGGGAGTTCTTTCTGGGGTTGTCAAGGTTTCGGGGTTCTTCACGAGTTCAGTTGCAAATTCTAAGGCGGGCAAGAAGTTGTTTGGCCTTTTACCAGGGGAAATGGTCATTGCTTCCCTTGATGGACTTAACAAGGTTTGTGATGCTGTTGAAGTTGCGGGAAAGAATGTAATGTCAACCTCATCTGATGTGACGACAGGACTTGTCTCTCACAAGTATGGGGAAGAGGCAGCTAAGGCAACAAATGAAGGGCTTGATGCCGCTGGGCATGCAATTGGGACGGCATGGACCGTCTTCAAATTCCGAAAGGCACTCAACCCAAAAAGTGTATTAAAACCAAGCTCCCTTGCTAAATCTGCTGCTGCCGAGATTAAGGCTAAGAAGGCTAAATAA

Network for GWHGAAZE007572

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06911.13	Senescence	264	431	6.60E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19366	SPG20	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.663
	SRR3591706	second leaf	13.181
	SRR3591707	mature leaf	11.678
	SRR3591708	Shoot apex	18.022
	SRR3591709	Stem	44.934
	SRR3591710	White floral bud	15.982
	SRR3591711	White flower	16.834
	SRR3591712	Green floral bud	20.468
	SRR3591713	Yellow flower	16.234
SRP173429	SRR8316895	Juvenile bud stage	12.063
	SRR8316896	Juvenile bud stage	17.845
	SRR8316897	Juvenile bud stage	6.605
	SRR8316894	Third green stage	6.155
	SRR8316900	Third green stage	18.555
	SRR8316901	Third green stage	18.243
	SRR8316898	Complete white stage	6.715
	SRR8316899	Complete white stage	22.745
	SRR8316903	Complete white stage	11.911
	SRR8316902	Silver flowering stage	4.871
	SRR8316904	Silver flowering stage	8.148
	SRR8316905	Silver flowering stage	5.607
	SRR8316906	Gold flowering stage	15.142
	SRR8316907	Gold flowering stage	14.997
	SRR8316908	Gold flowering stage	12.396
SRP132670	SRR6706286	Control	18.395
	SRR6706287	Light intensity 50%	19.475
	SRR6706288	Light intensity 20%	19.339
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.678
	CNS0095593	Slightly white alabastrum(diploid) 2	10.370
	CNS0095594	Slightly white alabastrum(diploid) 3	14.387
	CNS0095595	Whole white alabastrum(diploid) 2	11.544
	CNS0095596	Whole white alabastrum(diploid) 3	9.476
	CNS0095597	Whole white alabastrum(diploid) 4	10.568
	CNS0095598	Silvery flower (diploied) 1	13.710
	CNS0095599	Silvery flower (diploied) 2	9.317
	CNS0095600	Silvery flower (diploied) 3	13.409
	CNS0095601	Golden flower (diploid) 1	12.318
	CNS0095602	Golden flower (diploid) 2	12.715
	CNS0095603	Golden flower (diploid) 3	12.923
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.121
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.202
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.575
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.512
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.628
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.782
	CNS0095610	Silvery flower (tetraploid) 1	18.295
	CNS0095611	Silvery flower (tetraploid) 2	14.863
	CNS0095612	Silvery flower (tetraploid) 3	17.284
	CNS0095613	Golden flower (tetraploid) 1	12.793
	CNS0095614	Golden flower (tetraploid) 2	17.903
	CNS0095615	Golden flower (tetraploid) 3	10.413
CRA001975	CRR073297	Stem 1	14.261
	CRR073298	Stem 2	12.834
	CRR073299	Stem 3	8.966
	CRR073300	Leaf 1	15.304
	CRR073301	Leaf 2	13.578
	CRR073302	Leaf 3	12.672
	CRR073303	Juvenile bud 1	11.581
	CRR073304	Juvenile bud 2	10.861
	CRR073305	Juvenile bud 3	13.639
	CRR073306	Third green 1	6.222
	CRR073307	Third green 2	5.550
	CRR073308	Third green 3	6.303
	CRR073309	Second white 1	6.626
	CRR073310	Second white 2	6.427
	CRR073311	Second white 3	9.124
	CRR073312	Silver flowering 1	7.022
	CRR073313	Silver flowering 2	7.762
	CRR073314	Silver flowering 3	8.347
	CRR073315	Gold flowering 1	4.966
	CRR073316	Gold flowering 2	7.898
	CRR073317	Gold flowering 3	8.615
	CRR073318	Tawny withering 1	14.779
	CRR073319	Tawny withering 2	12.638
	CRR073320	Tawny withering 3	19.844