Detail information of GWHGAAZE007596


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01844.15.6398E-148unnamed protein product [Coffea canephora]
Swissprottr|F4JZ24|P4H10_ARATH1E-147Probable prolyl 4-hydroxylase 10 (Precursor)
trEMBLtr|A0A068U0Z0|A0A068U0Z0_COFCA2E-148Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01844.1}
TAIR10AT5G66060.11E-1072-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4850758948516138-
GWHAAZE00000002mRNA4850758948516138-
GWHAAZE00000002exon4851592148516138-
GWHAAZE00000002exon4851411048514194-
GWHAAZE00000002exon4851321148513308-
GWHAAZE00000002exon4851298548513082-
GWHAAZE00000002exon4850789248508021-
GWHAAZE00000002exon4850758948507781-
GWHAAZE00000002CDS4851592148516138-
GWHAAZE00000002CDS4851411048514194-
GWHAAZE00000002CDS4851321148513308-
GWHAAZE00000002CDS4851298548513082-
GWHAAZE00000002CDS4850789248508021-
GWHAAZE00000002CDS4850758948507781-
Transcript Sequence

Network for GWHGAAZE007596

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13640.72OG-FeII_Oxy_31722614.80E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00472P4HA Metabolic pathways map01100
Arginine and proline metabolismmap00330

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0005506molecular_functioniron ion binding
GO:0016705molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418molecular_functionL-ascorbic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.052
SRR3591706second leaf5.132
SRR3591707mature leaf0.765
SRR3591708Shoot apex9.008
SRR3591709Stem6.715
SRR3591710White floral bud6.498
SRR3591711White flower6.418
SRR3591712Green floral bud8.110
SRR3591713Yellow flower2.362
SRP173429 SRR8316895Juvenile bud stage 4.024
SRR8316896Juvenile bud stage 6.707
SRR8316897Juvenile bud stage 6.979
SRR8316894Third green stage 2.611
SRR8316900Third green stage 9.512
SRR8316901Third green stage 7.036
SRR8316898Complete white stage 8.072
SRR8316899Complete white stage 10.355
SRR8316903Complete white stage 12.122
SRR8316902Silver flowering stage2.917
SRR8316904Silver flowering stage3.440
SRR8316905Silver flowering stage2.554
SRR8316906Gold flowering stage 4.587
SRR8316907Gold flowering stage 4.279
SRR8316908Gold flowering stage 11.761
SRP132670SRR6706286Control9.368
SRR6706287Light intensity 50%10.614
SRR6706288Light intensity 20%11.793
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.146
CNS0095593Slightly white alabastrum(diploid) 26.096
CNS0095594Slightly white alabastrum(diploid) 35.359
CNS0095595Whole white alabastrum(diploid) 27.216
CNS0095596Whole white alabastrum(diploid) 38.465
CNS0095597Whole white alabastrum(diploid) 412.601
CNS0095598Silvery flower (diploied) 15.976
CNS0095599Silvery flower (diploied) 28.781
CNS0095600Silvery flower (diploied) 38.444
CNS0095601Golden flower (diploid) 18.390
CNS0095602Golden flower (diploid) 25.677
CNS0095603Golden flower (diploid) 36.690
CNS0095604Slightly white alabastrum(tetraploid) 112.882
CNS0095605Slightly white alabastrum(tetraploid) 28.220
CNS0095606Slightly white alabastrum(tetraploid) 311.910
CNS0095607Whole white alabastrum(tetraploid) 16.082
CNS0095608Whole white alabastrum(tetraploid) 29.211
CNS0095609Whole white alabastrum(tetraploid) 313.568
CNS0095610Silvery flower (tetraploid) 14.587
CNS0095611Silvery flower (tetraploid) 25.191
CNS0095612Silvery flower (tetraploid) 35.468
CNS0095613Golden flower (tetraploid) 13.153
CNS0095614Golden flower (tetraploid) 22.167
CNS0095615Golden flower (tetraploid) 30.977
CRA001975CRR073297Stem 112.200
CRR073298Stem 211.741
CRR073299Stem 311.552
CRR073300Leaf 118.461
CRR073301Leaf 216.313
CRR073302Leaf 313.338
CRR073303Juvenile bud 137.163
CRR073304Juvenile bud 276.587
CRR073305Juvenile bud 324.737
CRR073306Third green 116.237
CRR073307Third green 216.205
CRR073308Third green 313.015
CRR073309Second white 14.595
CRR073310Second white 24.049
CRR073311Second white 33.050
CRR073312Silver flowering 13.484
CRR073313Silver flowering 22.027
CRR073314Silver flowering 31.978
CRR073315Gold flowering 11.919
CRR073316Gold flowering 21.118
CRR073317Gold flowering 35.628
CRR073318Tawny withering 154.132
CRR073319Tawny withering 242.494
CRR073320Tawny withering 330.219