Detail information of GWHGAAZE007598


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009587704.13.0709E-161PREDICTED: probable prolyl 4-hydroxylase 10 [Nicotiana tomentosiformis]
Swissprottr|F4JZ24|P4H10_ARATH5E-160Probable prolyl 4-hydroxylase 10 (Precursor)
trEMBLtr|A0A068U0Z0|A0A068U0Z0_COFCA8E-161Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01844.1}
TAIR10AT5G66060.17E-1242-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4857827748585637-
GWHAAZE00000002mRNA4857827748585637-
GWHAAZE00000002exon4858555648585637-
GWHAAZE00000002exon4858231748582407-
GWHAAZE00000002exon4858147248581556-
GWHAAZE00000002exon4858050548580602-
GWHAAZE00000002exon4858031548580412-
GWHAAZE00000002exon4857887448579003-
GWHAAZE00000002exon4857858748578774-
GWHAAZE00000002exon4857827748578350-
GWHAAZE00000002CDS4858555648585637-
GWHAAZE00000002CDS4858231748582407-
GWHAAZE00000002CDS4858147248581556-
GWHAAZE00000002CDS4858050548580602-
GWHAAZE00000002CDS4858031548580412-
GWHAAZE00000002CDS4857887448579003-
GWHAAZE00000002CDS4857858748578774-
GWHAAZE00000002CDS4857827748578350-
Transcript Sequence

Network for GWHGAAZE007598

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13640.72OG-FeII_Oxy_31572751.20E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00472P4HA Metabolic pathways map01100
Arginine and proline metabolismmap00330

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0005506molecular_functioniron ion binding
GO:0016705molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418molecular_functionL-ascorbic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf71.640
SRR3591706second leaf36.451
SRR3591707mature leaf23.808
SRR3591708Shoot apex34.983
SRR3591709Stem50.156
SRR3591710White floral bud43.035
SRR3591711White flower45.358
SRR3591712Green floral bud65.808
SRR3591713Yellow flower45.281
SRP173429 SRR8316895Juvenile bud stage 42.444
SRR8316896Juvenile bud stage 50.376
SRR8316897Juvenile bud stage 36.332
SRR8316894Third green stage 24.121
SRR8316900Third green stage 72.351
SRR8316901Third green stage 69.077
SRR8316898Complete white stage 29.763
SRR8316899Complete white stage 77.090
SRR8316903Complete white stage 39.313
SRR8316902Silver flowering stage23.412
SRR8316904Silver flowering stage30.009
SRR8316905Silver flowering stage12.365
SRR8316906Gold flowering stage 55.671
SRR8316907Gold flowering stage 51.042
SRR8316908Gold flowering stage 59.517
SRP132670SRR6706286Control35.901
SRR6706287Light intensity 50%39.976
SRR6706288Light intensity 20%43.767
CNP0000432CNS0095592Slightly white alabastrum(diploid) 149.596
CNS0095593Slightly white alabastrum(diploid) 254.085
CNS0095594Slightly white alabastrum(diploid) 346.149
CNS0095595Whole white alabastrum(diploid) 258.162
CNS0095596Whole white alabastrum(diploid) 358.078
CNS0095597Whole white alabastrum(diploid) 454.513
CNS0095598Silvery flower (diploied) 134.366
CNS0095599Silvery flower (diploied) 232.547
CNS0095600Silvery flower (diploied) 351.496
CNS0095601Golden flower (diploid) 134.960
CNS0095602Golden flower (diploid) 260.922
CNS0095603Golden flower (diploid) 357.646
CNS0095604Slightly white alabastrum(tetraploid) 158.595
CNS0095605Slightly white alabastrum(tetraploid) 252.859
CNS0095606Slightly white alabastrum(tetraploid) 345.764
CNS0095607Whole white alabastrum(tetraploid) 162.106
CNS0095608Whole white alabastrum(tetraploid) 257.501
CNS0095609Whole white alabastrum(tetraploid) 347.583
CNS0095610Silvery flower (tetraploid) 135.903
CNS0095611Silvery flower (tetraploid) 228.314
CNS0095612Silvery flower (tetraploid) 326.247
CNS0095613Golden flower (tetraploid) 123.544
CNS0095614Golden flower (tetraploid) 240.039
CNS0095615Golden flower (tetraploid) 328.142
CRA001975CRR073297Stem 157.975
CRR073298Stem 249.668
CRR073299Stem 353.931
CRR073300Leaf 158.446
CRR073301Leaf 258.640
CRR073302Leaf 367.202
CRR073303Juvenile bud 173.577
CRR073304Juvenile bud 280.662
CRR073305Juvenile bud 357.152
CRR073306Third green 127.528
CRR073307Third green 232.623
CRR073308Third green 331.256
CRR073309Second white 139.556
CRR073310Second white 231.305
CRR073311Second white 325.200
CRR073312Silver flowering 145.386
CRR073313Silver flowering 257.506
CRR073314Silver flowering 355.112
CRR073315Gold flowering 130.808
CRR073316Gold flowering 237.773
CRR073317Gold flowering 331.787
CRR073318Tawny withering 159.990
CRR073319Tawny withering 261.283
CRR073320Tawny withering 370.574