Gene detail

Detail information of GWHGAAZE007606

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002529987.1	2.5791E-102	conserved hypothetical protein [Ricinus communis]
Swissprot	tr\|Q500W7\|PIGM_ARATH	3E-101	GPI mannosyltransferase 1
trEMBL	tr\|B9SVG8\|B9SVG8_RICCO	1E-102	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF32392.1}
TAIR10	AT5G22130.1	2E-74	mannosyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	48721919	48727103	+
GWHAAZE00000002	mRNA	48721919	48727103	+
GWHAAZE00000002	exon	48721919	48721963	+
GWHAAZE00000002	exon	48722365	48722693	+
GWHAAZE00000002	exon	48723207	48723389	+
GWHAAZE00000002	exon	48723953	48724012	+
GWHAAZE00000002	exon	48724670	48724783	+
GWHAAZE00000002	exon	48725132	48725217	+
GWHAAZE00000002	exon	48726786	48727103	+
GWHAAZE00000002	five_prime_UTR	48721919	48721963	+
GWHAAZE00000002	five_prime_UTR	48722365	48722422	+
GWHAAZE00000002	CDS	48722423	48722693	+
GWHAAZE00000002	CDS	48723207	48723389	+
GWHAAZE00000002	CDS	48723953	48724012	+
GWHAAZE00000002	CDS	48724670	48724783	+
GWHAAZE00000002	CDS	48725132	48725217	+
GWHAAZE00000002	CDS	48726786	48727103	+

Transcript Sequence
>GWHTAAZE007614 CATTACCAGTGCTTTGATTGTGAGAAGATAATATCTGTCAAAAAGATGAGCTTTTCAGCTACGTGATATTGAAATTCAGACTAGTATTTTGTCCCATTCAGCGATGAAAGCAATAAGCTTTCGGTCTCTTATTGTGTTCTCAGCATTTTTGCGGCTCTTTTTAATCATATATGGAGAATGGCAAGACACTCATATGGAGGTTAGATATACAGATGTTGATTACCTTGTATTTTCTGATGCTGCTGAGTTAGTGGCTTCCGGAATGTCCCCTTATAAAAGATCTACGTATCGGTACTCGCCTTTGATTGCGTTTCTTCTCATGCCAAATTCAATTATTCATCGATCGTGGGGAAAATTTATCTTCTCAGCTTCAGATTTACTTGTTGGGTTATTTATCCGCAAAATTCTGAAGCTGCGAGGGGTCCCTGAAAATCTATGTACCTACTCTGTCATGGTATGGCTTTTCAACCCATTTACCTTCACAATTGGAACACGCGGGAACTGTGAGCCCATTGTTTGTGCCATGGTTTTGTGGATCATTATTTGTCTCATGAATGGGGTTTTGTTGTGGGGGATTGTTTTGTGGGGTGGGGGTTGGATTATGTCCATTTCAATTGGTAATATATTCCAAGCTGCATTTTGGTATGGGCTTGTTGTCCATTTTAGAATCTATCCGATAATTTATGCACTTCCTATCATACTAGTTCTTGATCCTCTGCACTTCCAATCCGTGCAGCTGGTCCTTGTTTTCCGGTTTGGACATGATTTGCCATTCTGCTGGTTCTTGCAGACAGTGGCATTTGTCGCATTCAATAAGGTCATAACAGCGCAATATTTTGTGTGGTTCTTCTGCCTTTTACCCCTAATACTGCCATGGAGCAATATGAAGCTTAAATGGGAAGGCCTTGGCTGCATATTCTTGTGGACAGGAGCTCAATCTCATTGGTTAATGTGGGGATATCTCCTCGAATTCAAAGGTAAGCATGTATTTATGCAGCTTTGGATGGCAAGTATTTTGTTCTTAGCTGTTAATACCTATGTTCTTATCGGTATTATACGCTGCCACACTTATTCTCCGATATTTAGACGGTTAGAGCATCGAAGTTTGAAGAAGATATTGCAACGCAAGGGATGA

Network for GWHGAAZE007606

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05007.14	Mannosyl_trans	128	211	4.10E-12
PF05007.14	Mannosyl_trans	212	318	1.40E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05284	PIGM	Metabolic pathways	map01100
K05284	PIGM	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0016021	cellular_component	integral component of membrane
GO:0016758	molecular_function	transferase activity, transferring hexosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.480
	SRR3591706	second leaf	6.218
	SRR3591707	mature leaf	4.823
	SRR3591708	Shoot apex	7.282
	SRR3591709	Stem	5.963
	SRR3591710	White floral bud	10.209
	SRR3591711	White flower	8.200
	SRR3591712	Green floral bud	14.155
	SRR3591713	Yellow flower	4.022
SRP173429	SRR8316895	Juvenile bud stage	8.046
	SRR8316896	Juvenile bud stage	14.378
	SRR8316897	Juvenile bud stage	5.245
	SRR8316894	Third green stage	5.678
	SRR8316900	Third green stage	14.038
	SRR8316901	Third green stage	13.447
	SRR8316898	Complete white stage	3.521
	SRR8316899	Complete white stage	12.288
	SRR8316903	Complete white stage	6.243
	SRR8316902	Silver flowering stage	3.569
	SRR8316904	Silver flowering stage	6.184
	SRR8316905	Silver flowering stage	1.805
	SRR8316906	Gold flowering stage	5.923
	SRR8316907	Gold flowering stage	4.318
	SRR8316908	Gold flowering stage	6.167
SRP132670	SRR6706286	Control	5.124
	SRR6706287	Light intensity 50%	5.757
	SRR6706288	Light intensity 20%	5.511
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.611
	CNS0095593	Slightly white alabastrum(diploid) 2	10.687
	CNS0095594	Slightly white alabastrum(diploid) 3	8.826
	CNS0095595	Whole white alabastrum(diploid) 2	9.821
	CNS0095596	Whole white alabastrum(diploid) 3	12.164
	CNS0095597	Whole white alabastrum(diploid) 4	9.319
	CNS0095598	Silvery flower (diploied) 1	8.535
	CNS0095599	Silvery flower (diploied) 2	4.151
	CNS0095600	Silvery flower (diploied) 3	6.981
	CNS0095601	Golden flower (diploid) 1	4.756
	CNS0095602	Golden flower (diploid) 2	6.441
	CNS0095603	Golden flower (diploid) 3	6.114
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.153
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.822
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.917
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.911
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.801
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.975
	CNS0095610	Silvery flower (tetraploid) 1	5.083
	CNS0095611	Silvery flower (tetraploid) 2	5.820
	CNS0095612	Silvery flower (tetraploid) 3	4.474
	CNS0095613	Golden flower (tetraploid) 1	2.211
	CNS0095614	Golden flower (tetraploid) 2	3.925
	CNS0095615	Golden flower (tetraploid) 3	3.367
CRA001975	CRR073297	Stem 1	3.121
	CRR073298	Stem 2	3.940
	CRR073299	Stem 3	3.150
	CRR073300	Leaf 1	3.805
	CRR073301	Leaf 2	2.843
	CRR073302	Leaf 3	2.393
	CRR073303	Juvenile bud 1	3.538
	CRR073304	Juvenile bud 2	2.072
	CRR073305	Juvenile bud 3	3.712
	CRR073306	Third green 1	1.175
	CRR073307	Third green 2	1.120
	CRR073308	Third green 3	1.535
	CRR073309	Second white 1	1.396
	CRR073310	Second white 2	1.303
	CRR073311	Second white 3	2.098
	CRR073312	Silver flowering 1	1.691
	CRR073313	Silver flowering 2	0.759
	CRR073314	Silver flowering 3	0.649
	CRR073315	Gold flowering 1	4.371
	CRR073316	Gold flowering 2	2.667
	CRR073317	Gold flowering 3	1.669
	CRR073318	Tawny withering 1	4.213
	CRR073319	Tawny withering 2	2.717
	CRR073320	Tawny withering 3	6.311