Detail information of GWHGAAZE007614


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01823.12.7921E-164unnamed protein product [Coffea canephora]
trEMBLtr|A0A068U2I7|A0A068U2I7_COFCA1E-164Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01823.1}
TAIR10AT4G35730.12E-108Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4890757848912970-
GWHAAZE00000002mRNA4890757848912970-
GWHAAZE00000002exon4890757848908229-
GWHAAZE00000002exon4890886648908922-
GWHAAZE00000002exon4890900848909180-
GWHAAZE00000002exon4890977648909947-
GWHAAZE00000002exon4891002448910127-
GWHAAZE00000002exon4891263748912769-
GWHAAZE00000002exon4891287948912970-
GWHAAZE00000002CDS4891287948912970-
GWHAAZE00000002CDS4891263748912769-
GWHAAZE00000002CDS4891002448910127-
GWHAAZE00000002CDS4890977648909947-
GWHAAZE00000002CDS4890900848909180-
GWHAAZE00000002CDS4890886648908922-
GWHAAZE00000002CDS4890757848908229-
Transcript Sequence

Network for GWHGAAZE007614

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03398.15Ist1321951.60E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19476IST1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.062
SRR3591706second leaf7.884
SRR3591707mature leaf1.518
SRR3591708Shoot apex43.723
SRR3591709Stem17.846
SRR3591710White floral bud2.184
SRR3591711White flower1.378
SRR3591712Green floral bud3.274
SRR3591713Yellow flower0.223
SRP173429 SRR8316895Juvenile bud stage 9.459
SRR8316896Juvenile bud stage 8.185
SRR8316897Juvenile bud stage 6.080
SRR8316894Third green stage 3.890
SRR8316900Third green stage 4.249
SRR8316901Third green stage 4.178
SRR8316898Complete white stage 0.558
SRR8316899Complete white stage 2.876
SRR8316903Complete white stage 1.171
SRR8316902Silver flowering stage0.462
SRR8316904Silver flowering stage1.065
SRR8316905Silver flowering stage0.600
SRR8316906Gold flowering stage 0.759
SRR8316907Gold flowering stage 1.779
SRR8316908Gold flowering stage 0.573
SRP132670SRR6706286Control3.630
SRR6706287Light intensity 50%4.521
SRR6706288Light intensity 20%4.830
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.449
CNS0095593Slightly white alabastrum(diploid) 27.250
CNS0095594Slightly white alabastrum(diploid) 34.564
CNS0095595Whole white alabastrum(diploid) 23.314
CNS0095596Whole white alabastrum(diploid) 31.866
CNS0095597Whole white alabastrum(diploid) 41.869
CNS0095598Silvery flower (diploied) 16.332
CNS0095599Silvery flower (diploied) 26.334
CNS0095600Silvery flower (diploied) 31.401
CNS0095601Golden flower (diploid) 13.274
CNS0095602Golden flower (diploid) 22.102
CNS0095603Golden flower (diploid) 31.605
CNS0095604Slightly white alabastrum(tetraploid) 15.986
CNS0095605Slightly white alabastrum(tetraploid) 25.081
CNS0095606Slightly white alabastrum(tetraploid) 311.237
CNS0095607Whole white alabastrum(tetraploid) 13.646
CNS0095608Whole white alabastrum(tetraploid) 21.280
CNS0095609Whole white alabastrum(tetraploid) 31.958
CNS0095610Silvery flower (tetraploid) 10.377
CNS0095611Silvery flower (tetraploid) 20.711
CNS0095612Silvery flower (tetraploid) 30.459
CNS0095613Golden flower (tetraploid) 10.035
CNS0095614Golden flower (tetraploid) 20.044
CNS0095615Golden flower (tetraploid) 30.172
CRA001975CRR073297Stem 111.349
CRR073298Stem 211.443
CRR073299Stem 312.625
CRR073300Leaf 17.047
CRR073301Leaf 25.642
CRR073302Leaf 33.339
CRR073303Juvenile bud 13.572
CRR073304Juvenile bud 21.193
CRR073305Juvenile bud 33.616
CRR073306Third green 10.573
CRR073307Third green 20.343
CRR073308Third green 30.319
CRR073309Second white 10.057
CRR073310Second white 20.076
CRR073311Second white 30.077
CRR073312Silver flowering 10.033
CRR073313Silver flowering 20.144
CRR073314Silver flowering 30.039
CRR073315Gold flowering 12.652
CRR073316Gold flowering 21.670
CRR073317Gold flowering 31.421
CRR073318Tawny withering 127.320
CRR073319Tawny withering 216.894
CRR073320Tawny withering 327.625