Gene detail

Detail information of GWHGAAZE007628

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265847.1	3.38571E-71	PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Vitis vinifera]
Swissprot	tr\|O24473\|IF2B_WHEAT	2E-67	Eukaryotic translation initiation factor 2 subunit beta
trEMBL	tr\|F6GU78\|F6GU78_VITVI	1E-71	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43394.1}
TAIR10	AT5G20920.2	3E-48	eukaryotic translation initiation factor 2 beta subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	49061639	49063854	+
GWHAAZE00000002	mRNA	49061639	49063854	+
GWHAAZE00000002	exon	49061639	49061747	+
GWHAAZE00000002	exon	49062140	49062237	+
GWHAAZE00000002	exon	49062526	49062619	+
GWHAAZE00000002	exon	49062767	49062913	+
GWHAAZE00000002	exon	49063169	49063218	+
GWHAAZE00000002	exon	49063645	49063854	+
GWHAAZE00000002	CDS	49061639	49061747	+
GWHAAZE00000002	CDS	49062140	49062237	+
GWHAAZE00000002	CDS	49062526	49062619	+
GWHAAZE00000002	CDS	49062767	49062913	+
GWHAAZE00000002	CDS	49063169	49063218	+
GWHAAZE00000002	CDS	49063645	49063710	+
GWHAAZE00000002	three_prime_UTR	49063711	49063854	+

Transcript Sequence
>GWHTAAZE007636 ATTGCCCCTTTTGATCCTACTAAAACGAAGAAAAAGAATAAAATTGTTGTTCAAGATCCTGCAGATGATTCTGTTGATGCTTTGACTGAGAAAACAGAGAATTTGTCGGATCACACTCTTGAGGACGAACAAGGAGACGTAATTGTTCTACAGCAAGAACAACGATTGCCTTGGGAAGGGGCTGATAGAGATTATGAATATGATGAGCTGTTGGGCCGAGTTGCTGATATTCTTCTCGAAAATAATCCTGAACTTGCTGGTGATAGGCGTAGGATAGTTTTGAGACCTCCAGAAGTTCTACTTTGCCACGTGTCCGTGTGGAGCCATTATATGGCTTTCATGCTGGCTGAACTGGGGACAAGTGGTTCTGTTGACGCTGACCAAAGGTTGGTAGTGAAGGGAAGATTTACACCAAAATATTTTGAGGGAATCCAGCGAAAATTTGTCAACACAATCCTTTCTACGGAGGACCGTATCTTCTTCCTCATCTGTGAGACGTGTGGTTCTAGGCGATCTGTTGCACCAATCAAGGCTGGTTACCAGGCTCGTGTTGGTGGTCGGTAGGTTGGTGCTACATGATTGCCCTTTTCTTCCTTACGTCGTTGCTGGTACAAAATAAACTCAGTAGATTACTGTCATTCTGAATACTTTTTTTAGTGCTTGTATTTTGAGTTTCGCGTTAAATAGTAAGTTGTTTCTGGAGTGCAG

Network for GWHGAAZE007628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0068

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01873.18	eIF-5_eIF-2B	108	169	1.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03238	EIF2S2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.142
	SRR3591712	Green floral bud	0.102
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.537
	SRR8316896	Juvenile bud stage	2.604
	SRR8316897	Juvenile bud stage	1.385
	SRR8316894	Third green stage	1.444
	SRR8316900	Third green stage	3.233
	SRR8316901	Third green stage	3.457
	SRR8316898	Complete white stage	2.406
	SRR8316899	Complete white stage	5.963
	SRR8316903	Complete white stage	4.343
	SRR8316902	Silver flowering stage	1.434
	SRR8316904	Silver flowering stage	2.157
	SRR8316905	Silver flowering stage	1.278
	SRR8316906	Gold flowering stage	3.504
	SRR8316907	Gold flowering stage	1.941
	SRR8316908	Gold flowering stage	2.990
SRP132670	SRR6706286	Control	0.567
	SRR6706287	Light intensity 50%	0.525
	SRR6706288	Light intensity 20%	0.718
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.954
	CNS0095593	Slightly white alabastrum(diploid) 2	2.821
	CNS0095594	Slightly white alabastrum(diploid) 3	2.981
	CNS0095595	Whole white alabastrum(diploid) 2	2.411
	CNS0095596	Whole white alabastrum(diploid) 3	1.353
	CNS0095597	Whole white alabastrum(diploid) 4	3.154
	CNS0095598	Silvery flower (diploied) 1	5.344
	CNS0095599	Silvery flower (diploied) 2	2.265
	CNS0095600	Silvery flower (diploied) 3	1.775
	CNS0095601	Golden flower (diploid) 1	3.817
	CNS0095602	Golden flower (diploid) 2	1.454
	CNS0095603	Golden flower (diploid) 3	1.514
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.271
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.207
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.012
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.225
	CNS0095610	Silvery flower (tetraploid) 1	0.082
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.080
	CNS0095613	Golden flower (tetraploid) 1	0.074
	CNS0095614	Golden flower (tetraploid) 2	0.144
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	1.067
	CRR073298	Stem 2	0.830
	CRR073299	Stem 3	0.189
	CRR073300	Leaf 1	0.914
	CRR073301	Leaf 2	2.245
	CRR073302	Leaf 3	0.124
	CRR073303	Juvenile bud 1	0.374
	CRR073304	Juvenile bud 2	0.213
	CRR073305	Juvenile bud 3	0.364
	CRR073306	Third green 1	0.017
	CRR073307	Third green 2	0.036
	CRR073308	Third green 3	0.040
	CRR073309	Second white 1	0.411
	CRR073310	Second white 2	0.097
	CRR073311	Second white 3	0.094
	CRR073312	Silver flowering 1	0.024
	CRR073313	Silver flowering 2	0.114
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.185
	CRR073316	Gold flowering 2	0.246
	CRR073317	Gold flowering 3	0.041
	CRR073318	Tawny withering 1	0.420
	CRR073319	Tawny withering 2	0.502
	CRR073320	Tawny withering 3	0.644