Detail information of GWHGAAZE007638


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010265449.10PREDICTED: isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [Nelumbo nucifera]
Swissprottr|Q8LFC0|IDH1_ARATH0Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (Precursor)
trEMBLtr|B9SRZ2|B9SRZ2_RICCO0Isocitrate dehydrogenase, putative {ECO:0000313|EMBL:EEF33583.1}
TAIR10AT4G35260.11E-178isocitrate dehydrogenase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4918129049190390-
GWHAAZE00000002mRNA4918129049190390-
GWHAAZE00000002exon4918985749190390-
GWHAAZE00000002exon4918805449188293-
GWHAAZE00000002exon4918434249184420-
GWHAAZE00000002exon4918129049181564-
GWHAAZE00000002CDS4918985749190390-
GWHAAZE00000002CDS4918805449188293-
GWHAAZE00000002CDS4918434249184420-
GWHAAZE00000002CDS4918129049181564-
Transcript Sequence

Network for GWHGAAZE007638

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0199


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.21Iso_dh483701.10E-80
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00030IDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020

Gene Ontology

GO term OntologyName
GO:0006099biological_processtricarboxylic acid cycle
GO:0055114biological_processoxidation-reduction process
GO:0004449molecular_functionisocitrate dehydrogenase (NAD+) activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf117.872
SRR3591706second leaf62.308
SRR3591707mature leaf51.719
SRR3591708Shoot apex75.628
SRR3591709Stem72.942
SRR3591710White floral bud123.920
SRR3591711White flower129.443
SRR3591712Green floral bud149.703
SRR3591713Yellow flower154.596
SRP173429 SRR8316895Juvenile bud stage 73.763
SRR8316896Juvenile bud stage 112.662
SRR8316897Juvenile bud stage 51.893
SRR8316894Third green stage 46.191
SRR8316900Third green stage 180.405
SRR8316901Third green stage 167.636
SRR8316898Complete white stage 98.063
SRR8316899Complete white stage 234.965
SRR8316903Complete white stage 106.038
SRR8316902Silver flowering stage87.997
SRR8316904Silver flowering stage99.772
SRR8316905Silver flowering stage54.204
SRR8316906Gold flowering stage 171.682
SRR8316907Gold flowering stage 157.769
SRR8316908Gold flowering stage 182.230
SRP132670SRR6706286Control228.531
SRR6706287Light intensity 50%223.560
SRR6706288Light intensity 20%225.955
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1105.331
CNS0095593Slightly white alabastrum(diploid) 2107.460
CNS0095594Slightly white alabastrum(diploid) 393.589
CNS0095595Whole white alabastrum(diploid) 2109.074
CNS0095596Whole white alabastrum(diploid) 3124.895
CNS0095597Whole white alabastrum(diploid) 4113.631
CNS0095598Silvery flower (diploied) 180.125
CNS0095599Silvery flower (diploied) 272.209
CNS0095600Silvery flower (diploied) 3133.629
CNS0095601Golden flower (diploid) 175.762
CNS0095602Golden flower (diploid) 2112.526
CNS0095603Golden flower (diploid) 3114.516
CNS0095604Slightly white alabastrum(tetraploid) 1125.022
CNS0095605Slightly white alabastrum(tetraploid) 2111.825
CNS0095606Slightly white alabastrum(tetraploid) 3130.986
CNS0095607Whole white alabastrum(tetraploid) 1107.571
CNS0095608Whole white alabastrum(tetraploid) 2114.182
CNS0095609Whole white alabastrum(tetraploid) 3159.588
CNS0095610Silvery flower (tetraploid) 1144.817
CNS0095611Silvery flower (tetraploid) 2131.342
CNS0095612Silvery flower (tetraploid) 3139.270
CNS0095613Golden flower (tetraploid) 1109.942
CNS0095614Golden flower (tetraploid) 2140.121
CNS0095615Golden flower (tetraploid) 3137.662
CRA001975CRR073297Stem 1126.560
CRR073298Stem 2126.367
CRR073299Stem 3137.288
CRR073300Leaf 1178.087
CRR073301Leaf 2169.991
CRR073302Leaf 3188.133
CRR073303Juvenile bud 1213.583
CRR073304Juvenile bud 2236.861
CRR073305Juvenile bud 3192.153
CRR073306Third green 1136.402
CRR073307Third green 2124.812
CRR073308Third green 3118.677
CRR073309Second white 1138.886
CRR073310Second white 2115.214
CRR073311Second white 3107.785
CRR073312Silver flowering 1120.050
CRR073313Silver flowering 2132.916
CRR073314Silver flowering 399.375
CRR073315Gold flowering 180.083
CRR073316Gold flowering 2113.395
CRR073317Gold flowering 388.530
CRR073318Tawny withering 1127.352
CRR073319Tawny withering 292.080
CRR073320Tawny withering 3106.879