Detail information of GWHGAAZE007667


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01797.13.2109E-87unnamed protein product [Coffea canephora]
Swissprottr|O81791|RKD5_ARATH2E-50Protein RKD5
trEMBLtr|A0A068U0G8|A0A068U0G8_COFCA1E-87Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01797.1}
TAIR10AT4G35590.12E-40RWP-RK domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4988849949891969-
GWHAAZE00000002mRNA4988849949891969-
GWHAAZE00000002exon4989190649891969-
GWHAAZE00000002exon4989127149891532-
GWHAAZE00000002exon4988977649890011-
GWHAAZE00000002exon4988849949888695-
GWHAAZE00000002CDS4989190649891969-
GWHAAZE00000002CDS4989127149891532-
GWHAAZE00000002CDS4988977649890011-
GWHAAZE00000002CDS4988849949888695-
Transcript Sequence

Network for GWHGAAZE007667

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02042.16RWP-RK2022494.90E-21
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyRWP-RK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.095
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.145
SRR3591709Stem1.378
SRR3591710White floral bud0.835
SRR3591711White flower0.277
SRR3591712Green floral bud0.191
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.158
SRR8316896Juvenile bud stage 0.613
SRR8316897Juvenile bud stage 0.446
SRR8316894Third green stage 0.582
SRR8316900Third green stage 0.974
SRR8316901Third green stage 1.441
SRR8316898Complete white stage 0.223
SRR8316899Complete white stage 0.125
SRR8316903Complete white stage 0.345
SRR8316902Silver flowering stage0.068
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.071
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.943
SRR6706287Light intensity 50%1.201
SRR6706288Light intensity 20%1.195
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.164
CNS0095593Slightly white alabastrum(diploid) 20.584
CNS0095594Slightly white alabastrum(diploid) 30.776
CNS0095595Whole white alabastrum(diploid) 20.639
CNS0095596Whole white alabastrum(diploid) 30.011
CNS0095597Whole white alabastrum(diploid) 40.725
CNS0095598Silvery flower (diploied) 10.295
CNS0095599Silvery flower (diploied) 20.213
CNS0095600Silvery flower (diploied) 30.174
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.221
CNS0095603Golden flower (diploid) 30.182
CNS0095604Slightly white alabastrum(tetraploid) 10.636
CNS0095605Slightly white alabastrum(tetraploid) 20.450
CNS0095606Slightly white alabastrum(tetraploid) 31.598
CNS0095607Whole white alabastrum(tetraploid) 10.787
CNS0095608Whole white alabastrum(tetraploid) 20.195
CNS0095609Whole white alabastrum(tetraploid) 30.385
CNS0095610Silvery flower (tetraploid) 10.036
CNS0095611Silvery flower (tetraploid) 20.114
CNS0095612Silvery flower (tetraploid) 30.087
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.199
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 13.129
CRR073298Stem 21.874
CRR073299Stem 35.370
CRR073300Leaf 11.423
CRR073301Leaf 21.412
CRR073302Leaf 31.261
CRR073303Juvenile bud 10.135
CRR073304Juvenile bud 20.127
CRR073305Juvenile bud 30.930
CRR073306Third green 10.069
CRR073307Third green 20.000
CRR073308Third green 30.023
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.006
CRR073318Tawny withering 10.577
CRR073319Tawny withering 20.142
CRR073320Tawny withering 33.552