Gene detail

Detail information of GWHGAAZE007671

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004232569.1	1.88212E-96	PREDICTED: WUSCHEL-related homeobox 8 [Solanum lycopersicum]
Swissprot	tr\|Q5QMM3\|WOX8_ORYSJ	2E-73	WUSCHEL-related homeobox 8
trEMBL	tr\|K4BAD7\|K4BAD7_SOLLC	7E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g082670.2.1}
TAIR10	AT4G35550.1	2E-53	WUSCHEL related homeobox 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	49964997	49968089	+
GWHAAZE00000002	mRNA	49964997	49968089	+
GWHAAZE00000002	exon	49964997	49965177	+
GWHAAZE00000002	exon	49967587	49968089	+
GWHAAZE00000002	CDS	49964997	49965177	+
GWHAAZE00000002	CDS	49967587	49968089	+

Transcript Sequence
>GWHTAAZE007679 ATGAGAGAGCAAGCTATGGACTGCAACAATGGCGGCGGCAGCAGCAGCAGCATGTTCGTGAAGGTAATGACCGACGAGCAAATGGAAGTACTCCGTCAACAAATCGCAGCTTACTCCACCATCTGTCAACAACTCGTCGATTTGCACAAATCCATCTCTAATTCTCATCCCCTTCTCCCAGGAGTTAGGTTGGGGAATCTATATTGTGATCCCTCGGTTACATCTTCCGGCCACAAAATTACCGGCAGGCAACGGTGGACCCCAACTCCTGTTCAGCTCCAAATTCTGGAGGGTATTTTCGAGCAAGGCAATGGGACTCCGAGCAAGCAGAAAATTAAAGAAATAACCTCTGATTTGTCTCAACATGGCCCAATTTCCGAAACAAATGTTTATAATTGGTTCCAAAATAGGCGTGCTCGATCAAAAAGGAAACATGTTTCGGCACCAAACAATGCTGAATCAGAAGTGGAAACTGAAGTTGACTCACCCAATGAACAGAACACAAAACCAGATGATTTCCAGTCTCATCATAACTCTGCTGCAGAGGATTTGTGCTTCGATACTATAGATACAAGGTCTAATAAGGTGGAGCCCATTTTTCCATTAGATACCAGCTTGAGGCCTGCGGAGAGTCTGGGCCAAATGTCTTTCTACGAAAGTATGTTAACAAACCCAAGTACGTAA

Network for GWHGAAZE007671

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0074

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	83	143	2.40E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-WOX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.628
	SRR3591706	second leaf	21.468
	SRR3591707	mature leaf	16.416
	SRR3591708	Shoot apex	27.469
	SRR3591709	Stem	33.101
	SRR3591710	White floral bud	34.276
	SRR3591711	White flower	20.488
	SRR3591712	Green floral bud	45.851
	SRR3591713	Yellow flower	15.647
SRP173429	SRR8316895	Juvenile bud stage	7.757
	SRR8316896	Juvenile bud stage	10.615
	SRR8316897	Juvenile bud stage	3.180
	SRR8316894	Third green stage	6.543
	SRR8316900	Third green stage	27.127
	SRR8316901	Third green stage	22.483
	SRR8316898	Complete white stage	14.079
	SRR8316899	Complete white stage	47.853
	SRR8316903	Complete white stage	17.628
	SRR8316902	Silver flowering stage	6.142
	SRR8316904	Silver flowering stage	8.733
	SRR8316905	Silver flowering stage	4.889
	SRR8316906	Gold flowering stage	15.289
	SRR8316907	Gold flowering stage	12.975
	SRR8316908	Gold flowering stage	12.571
SRP132670	SRR6706286	Control	20.451
	SRR6706287	Light intensity 50%	18.831
	SRR6706288	Light intensity 20%	22.419
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.789
	CNS0095593	Slightly white alabastrum(diploid) 2	15.007
	CNS0095594	Slightly white alabastrum(diploid) 3	9.888
	CNS0095595	Whole white alabastrum(diploid) 2	12.894
	CNS0095596	Whole white alabastrum(diploid) 3	13.353
	CNS0095597	Whole white alabastrum(diploid) 4	14.223
	CNS0095598	Silvery flower (diploied) 1	11.078
	CNS0095599	Silvery flower (diploied) 2	10.397
	CNS0095600	Silvery flower (diploied) 3	13.604
	CNS0095601	Golden flower (diploid) 1	14.552
	CNS0095602	Golden flower (diploid) 2	15.524
	CNS0095603	Golden flower (diploid) 3	15.908
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.142
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.187
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.425
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.020
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.740
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.272
	CNS0095610	Silvery flower (tetraploid) 1	16.177
	CNS0095611	Silvery flower (tetraploid) 2	19.740
	CNS0095612	Silvery flower (tetraploid) 3	14.489
	CNS0095613	Golden flower (tetraploid) 1	10.300
	CNS0095614	Golden flower (tetraploid) 2	17.233
	CNS0095615	Golden flower (tetraploid) 3	11.662
CRA001975	CRR073297	Stem 1	24.645
	CRR073298	Stem 2	21.839
	CRR073299	Stem 3	23.444
	CRR073300	Leaf 1	34.519
	CRR073301	Leaf 2	25.422
	CRR073302	Leaf 3	31.220
	CRR073303	Juvenile bud 1	35.030
	CRR073304	Juvenile bud 2	32.097
	CRR073305	Juvenile bud 3	18.685
	CRR073306	Third green 1	4.104
	CRR073307	Third green 2	8.352
	CRR073308	Third green 3	6.518
	CRR073309	Second white 1	5.571
	CRR073310	Second white 2	4.399
	CRR073311	Second white 3	2.617
	CRR073312	Silver flowering 1	1.220
	CRR073313	Silver flowering 2	2.494
	CRR073314	Silver flowering 3	1.301
	CRR073315	Gold flowering 1	7.415
	CRR073316	Gold flowering 2	9.828
	CRR073317	Gold flowering 3	8.475
	CRR073318	Tawny withering 1	29.861
	CRR073319	Tawny withering 2	18.948
	CRR073320	Tawny withering 3	23.788