Detail information of GWHGAAZE007674


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008241931.10PREDICTED: DNA mismatch repair protein MLH3 [Prunus mume]
Swissprottr|F4JN26|MLH3_ARATH6E-86DNA mismatch repair protein MLH3
trEMBLtr|A0A067L5V4|A0A067L5V4_JATCU2E-146Uncharacterized protein {ECO:0000313|EMBL:KDP43772.1}
TAIR10AT4G35520.14E-81MUTL protein homolog 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5000022350013645-
GWHAAZE00000002mRNA5000022350013645-
GWHAAZE00000002exon5000022350000270-
GWHAAZE00000002exon5000049950000693-
GWHAAZE00000002exon5000080950000882-
GWHAAZE00000002exon5000159550001686-
GWHAAZE00000002exon5000178150001874-
GWHAAZE00000002exon5000195950002163-
GWHAAZE00000002exon5000226350002407-
GWHAAZE00000002exon5000258850003290-
GWHAAZE00000002exon5000418450004270-
GWHAAZE00000002exon5000436750004436-
GWHAAZE00000002exon5000781250008029-
GWHAAZE00000002exon5000814850008163-
GWHAAZE00000002exon5000826650008431-
GWHAAZE00000002exon5000903250009110-
GWHAAZE00000002exon5001077150010828-
GWHAAZE00000002exon5001095550011100-
GWHAAZE00000002exon5001255850012605-
GWHAAZE00000002exon5001269750012748-
GWHAAZE00000002exon5001348450013645-
GWHAAZE00000002CDS5001348450013645-
GWHAAZE00000002CDS5001269750012748-
GWHAAZE00000002CDS5001255850012605-
GWHAAZE00000002CDS5001095550011100-
GWHAAZE00000002CDS5001077150010828-
GWHAAZE00000002CDS5000903250009110-
GWHAAZE00000002CDS5000826650008431-
GWHAAZE00000002CDS5000814850008163-
GWHAAZE00000002CDS5000781250008029-
GWHAAZE00000002CDS5000436750004436-
GWHAAZE00000002CDS5000418450004270-
GWHAAZE00000002CDS5000258850003290-
GWHAAZE00000002CDS5000226350002407-
GWHAAZE00000002CDS5000195950002163-
GWHAAZE00000002CDS5000178150001874-
GWHAAZE00000002CDS5000159550001686-
GWHAAZE00000002CDS5000080950000882-
GWHAAZE00000002CDS5000049950000693-
GWHAAZE00000002CDS5000022350000270-
Transcript Sequence

Network for GWHGAAZE007674

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13589.7HATPase_c_3371315.10E-07
PF01119.20DNA_mis_repair2013316.90E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08739MLH3 Mismatch repair map03430

Gene Ontology

GO term OntologyName
GO:0006298biological_processmismatch repair
GO:0005524molecular_functionATP binding
GO:0030983molecular_functionmismatched DNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.665
SRR3591706second leaf8.738
SRR3591707mature leaf8.420
SRR3591708Shoot apex10.176
SRR3591709Stem5.923
SRR3591710White floral bud6.106
SRR3591711White flower7.931
SRR3591712Green floral bud6.371
SRR3591713Yellow flower4.825
SRP173429 SRR8316895Juvenile bud stage 5.734
SRR8316896Juvenile bud stage 6.616
SRR8316897Juvenile bud stage 3.776
SRR8316894Third green stage 2.821
SRR8316900Third green stage 6.390
SRR8316901Third green stage 5.959
SRR8316898Complete white stage 1.112
SRR8316899Complete white stage 6.829
SRR8316903Complete white stage 2.863
SRR8316902Silver flowering stage1.482
SRR8316904Silver flowering stage2.996
SRR8316905Silver flowering stage0.857
SRR8316906Gold flowering stage 2.911
SRR8316907Gold flowering stage 3.993
SRR8316908Gold flowering stage 3.556
SRP132670SRR6706286Control3.159
SRR6706287Light intensity 50%4.398
SRR6706288Light intensity 20%4.327
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.454
CNS0095593Slightly white alabastrum(diploid) 23.071
CNS0095594Slightly white alabastrum(diploid) 33.899
CNS0095595Whole white alabastrum(diploid) 22.927
CNS0095596Whole white alabastrum(diploid) 31.859
CNS0095597Whole white alabastrum(diploid) 42.493
CNS0095598Silvery flower (diploied) 15.552
CNS0095599Silvery flower (diploied) 24.732
CNS0095600Silvery flower (diploied) 35.724
CNS0095601Golden flower (diploid) 13.777
CNS0095602Golden flower (diploid) 25.247
CNS0095603Golden flower (diploid) 34.404
CNS0095604Slightly white alabastrum(tetraploid) 14.909
CNS0095605Slightly white alabastrum(tetraploid) 23.154
CNS0095606Slightly white alabastrum(tetraploid) 37.927
CNS0095607Whole white alabastrum(tetraploid) 12.674
CNS0095608Whole white alabastrum(tetraploid) 21.294
CNS0095609Whole white alabastrum(tetraploid) 35.117
CNS0095610Silvery flower (tetraploid) 15.453
CNS0095611Silvery flower (tetraploid) 24.836
CNS0095612Silvery flower (tetraploid) 35.787
CNS0095613Golden flower (tetraploid) 11.263
CNS0095614Golden flower (tetraploid) 23.885
CNS0095615Golden flower (tetraploid) 32.425
CRA001975CRR073297Stem 15.799
CRR073298Stem 24.669
CRR073299Stem 32.891
CRR073300Leaf 15.780
CRR073301Leaf 24.588
CRR073302Leaf 32.719
CRR073303Juvenile bud 11.900
CRR073304Juvenile bud 21.037
CRR073305Juvenile bud 32.997
CRR073306Third green 10.124
CRR073307Third green 20.070
CRR073308Third green 30.302
CRR073309Second white 10.050
CRR073310Second white 20.482
CRR073311Second white 30.464
CRR073312Silver flowering 10.512
CRR073313Silver flowering 20.209
CRR073314Silver flowering 30.277
CRR073315Gold flowering 11.535
CRR073316Gold flowering 22.965
CRR073317Gold flowering 30.475
CRR073318Tawny withering 12.083
CRR073319Tawny withering 22.207
CRR073320Tawny withering 31.736