Gene detail

Detail information of GWHGAAZE007678

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009762948.1	PREDICTED: actin cytoskeleton-regulatory complex protein pan1-like isoform X3 [Nicotiana sylvestris]
trEMBL	tr\|A0A068TZT0\|A0A068TZT0_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01780.1}
TAIR10	AT1G21630.1	Calcium-binding EF hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	50088469	50106363	+
GWHAAZE00000002	mRNA	50088469	50106363	+
GWHAAZE00000002	exon	50088469	50088727	+
GWHAAZE00000002	exon	50090839	50091982	+
GWHAAZE00000002	exon	50095167	50095385	+
GWHAAZE00000002	exon	50095725	50095957	+
GWHAAZE00000002	exon	50097063	50097137	+
GWHAAZE00000002	exon	50098910	50098981	+
GWHAAZE00000002	exon	50099068	50099166	+
GWHAAZE00000002	exon	50101124	50101192	+
GWHAAZE00000002	exon	50101267	50101444	+
GWHAAZE00000002	exon	50102328	50102396	+
GWHAAZE00000002	exon	50102759	50103200	+
GWHAAZE00000002	exon	50103471	50103564	+
GWHAAZE00000002	exon	50105635	50106363	+
GWHAAZE00000002	five_prime_UTR	50088469	50088589	+
GWHAAZE00000002	CDS	50088590	50088727	+
GWHAAZE00000002	CDS	50090839	50091982	+
GWHAAZE00000002	CDS	50095167	50095385	+
GWHAAZE00000002	CDS	50095725	50095957	+
GWHAAZE00000002	CDS	50097063	50097137	+
GWHAAZE00000002	CDS	50098910	50098981	+
GWHAAZE00000002	CDS	50099068	50099166	+
GWHAAZE00000002	CDS	50101124	50101192	+
GWHAAZE00000002	CDS	50101267	50101444	+
GWHAAZE00000002	CDS	50102328	50102396	+
GWHAAZE00000002	CDS	50102759	50103200	+
GWHAAZE00000002	CDS	50103471	50103564	+
GWHAAZE00000002	CDS	50105635	50106363	+

Transcript Sequence
>GWHTAAZE007686 AATCTATGATGATAGATTTTTGATGTCGTTCATTCAACACCTCCTCTTCGATCTTCAACGACATCGGATTACTATTGAATAATAATTCTAATCTGACTCCTTCTACTATTCATACATCTCAATGGCGGGGGGGCCCAATATGGATCAATTCGAAGCTTATTTTCGAAGAGCAGATTTGGATCAGGACGGTCGGATCAGTGGAGCTGAGGCCGTTGGATTCTTCCAAGGCTCCAATTTGCCTAAACAAGTCCTCGCTCAGATATGGACACATGCTGATCAGAATCGAACTGGTTTCCTTGGTCGAGCAGAGTTTTATAATGCTCTTAAGCTTGTAACCGTGGCACAAAGTAAGCGAGAGCTGACCCCAGATATTGTGAAGGCGGCTTTATATGGGCCTGCTTCAGCTCAAATTCCTCCTCCCCGAATAAATCTTGCTGCCATACCAGCCCCTCAATCAAATTTTAGGGCAGGGACACCAACCTCACAAATGAGTGGTACTGGTCCAACACCTCAAGGTACTGGCTTCAGAGGGCCACAGGGCTTTACACCTCAGCAAAATCAGTTCATGAGGCCGCCTCGACCCCTGCCCCCTAGTACTACATTCAATTCACAGCCGGCTTTTGGAAGTCAAGGAATGTCTGGGGTAGGCACTATGGTAACCTCTCGTCCTCCAAGCCCAAGCATCTCCACTGATTGGCAAGGTGGAGGGGCAGGTGCTCTCCCAGCTGGAGTAACTTCTCAAGTTCCTACCAGAGGAATTAGTCCTTCCTCGGCACTGGATGGATTTGGGTTCACTTCAACTGGATCCACGCAATTGGCACAACCTAGACCGCAGGCAGCCGTTGGGTTGACACAACCTGCGGCACCCAGACCAAATGGGTTTGCGTCTGACCCAATGTTTGGAGATGTTTTTTCTGCAACCCCATCACTAGCAAAGCAAGATTCGCTGGCGCCTGCATCTTCTGCTGGTGGTTTACCTGTCTCATCAGCCATTGGCCCAGCCTCTACTGGTCCACAGCATGCAGTTAATTCGAGTCCACTTGCCGGTGGCTTACCTGTCTCATCAGCCATTGTTGCGGTCTCTGCTGGGCCTCAACATACAGTTACGTCGAGTCCACAGGTGTCTTTTCAGAGTACAATTACTCAGCAACCTACTGTTAGTCAGCACCAGCAAATTCAGCCAACAGCAAACCAAAATCAGGTTTCGGCGCGAAATTTAACTACATATCCTAGTGGACCTGCAAATTCTGCTGTTGGCCAAACCCAGCAACCATGGCCAAGGATGACTCAGTCTTCTGTCCAGAAGTACAGCAAAGTATTTGTGGAAGTAGATACTGACAGAGATGGAAAAATCACTGGTGAACAGGCACGTAACCTGTTCTTAAGTTGGAGGTTGCCACGAGAGATCTTAAAGCAGGTGTGGGACTTGTCTGATCAAGATAATGATAGCATGCTTTCTTTGAGGGAATTTTGTGTTGCTCTGTATCTTATGGAACGGTATAGAGAAGGCCGCCCTCTCCCTTCGGTGCTTCCAAGTGGTATTATGTTGGAGGAGACACAGTTGCCTGCCTCTGGTCAACTTGCTGCCCCACCTGGCAACACAGCTTGGGCACCTACTCCGGGGTTGCAACAATCACAAAGAATGCCTGGCGCACGACCGGTCCATCCAGCTAGTGGAGCAAGGCCACCAAGGCCTGGGCCTGTGCCGATTCCTCTGGAGGATGAGGCTATGCAACCCAGGCAGCAAAAACCTAGAGTCCCAGTGCTGGAGAAACATCTTGTGGACCAACTTAGTTCAGAGGAGCAGAATTCACTGAACTCGAAGTTCCAGGAAGCAACAGAGGCAGATAAAAAGGTAGATGAACTGGAAAAGGAGATAATGGATTCTAGAGAGAAAATTGAGTTCTATCGCACCAAGATGCAGGAACTTATTTTGTACAAAAGCAGATGCGACAATCGTTTAAATGAAATCACTGAAAGGGTTTCTGCGGACAAACGAGAGGTTGAAATACTGGCAAAGAAATACGAAGAGAAATACAAGCAGTCTGGAGATGTAGCCTCTAAATTAAGTATTGAGGAGGCCACGTTTCGTGATATTCAGGAGAAAAAGATGGAGCTTTATCGGGCAATTGTCAAACTAGAGGAAGATGGTAGCCCTGATGGTATACAGGTACGTGCTGATCGCATCCAATTGGATCTCGAGGAACAAGTAAAAGCCTTGAATGAGCGTTGCAAGGTTTATGGATTACGTGGCAAACCAACTACACTGGTTGAGCTCCCCTTTGGTATTTTCTCTTCTATCCTAGCCTTTACTCTTTGGTTTAGTTCACTTCATATCCTTGTTAATGGCTGGCAACCTGGCATCCAAGAAGGAGCAGCTGATCTGGATGAAGATTGGGATAAGTTTGAAGATGAAGGATTCACATTTGTCAAAGAGTTCACCCTTGATGTGCAAAATGTTATAGCTCCTCCCAAAACTAAGTCCTCATTGATTAGAGATAAACTTTCTTCAAAGGACGAGGAGTCAACTGCATTTTCATCTTCTAATGCCGATGGTAAGTCAGATAGTCTAATGGCACCTGAGGAAAAGAACGGTCAGGATGAGTCAGAAAATTCACGAAGCAAAGAGAGTGTATCAAGGAGTCCACCTGACAGTCCAGCAAGAAAGAACGCAGGGGAGAACCCGTCTTACAGTCCGTCTAGAAGGAATGCAATTGACAGCGCTTTTGACAGTCCATCTAGAAAGAATGCAGTGGAGAGCCCATTTAACAGTCCAACTATAAGAAATGCAATGGAGAGTCCAACAAAAAAATTCGACGTTTCCCCTAGAAAGAATAATGGTGAACATTCACCCATGAGTGAACATGGCGGGGACAAAAACTTTGATGAAGCGGGATGGGGTGCATTTGACACTCACTATGATACAGATGCTGGTTGGGACTTCAATCCCAAGGAAACAAATCGTGAGATTCATAGTGAAAGTTCATTCCTTGGCGCTGACGACTGGGGTCTAAACCCGATAAAAACGGGGTCCACTCACACTGATAACACATACCAGAAAAGGAGCTCATTCCCTTTTGCAGATTCCGTTCCGGGCACTCCCGCTTACAGCTCTGTCGGCTCTCCACAAGCCAACAACTTGTTCCAAAAGAAAGGTCCGTTCGGTTTCGCCGATTCTGTCCCTAGCACTCCCATGTACAATTCCACTCCGATGTACAACTCCGCCGCCTCCCCATTCACAAATAACTTGTTCGAAAAGAAGAGCCCATTCGGCTTCGCTGATTCTGTTCCGAGCACCCCCATGTTCAATGACGGCCTGGAAACTAACTCATTTGACACTTTCTCAAGATTCGATTCCTTCAGCTTGAATGACGGGCCGTCCTTCTCAAGGTTTGATTCAATGCGAAGTACCCGAGACTCAGAATACGACCATGGGTTTTTCCCTCCGAGTGAATCCTCGTCCTCGTTTGCGAGGTTCGATTCAATGCGTAGTACCCAGGACTCGGATTTTGGACCCGGTCTCACGAGGTTCGATTCGATGCGGAGCACCTCAGATTTTGGCCATGGGTTCCCGTCGTTTGATGATACAGACCCGTTTGGGTCGAGTGATCCGTTCAAGACCACGTCGACTATTGAGAGCCAAACCCCGAGGAGAGATTCCGATAGTTGGAGAGCTTTTTAG

Network for GWHGAAZE007678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0099

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.7	EF-hand_5	11	29	0.0054
PF12763.8	EF-hand_4	386	457	6.00E-11

Protein Sequence

>GWHPAAZE007682
MAGGPNMDQFEAYFRRADLDQDGRISGAEAVGFFQGSNLPKQVLAQIWTHADQNRTGFLGRAEFYNALKLVTVAQSKRELTPDIVKAALYGPASAQIPPPRINLAAIPAPQSNFRAGTPTSQMSGTGPTPQGTGFRGPQGFTPQQNQFMRPPRPLPPSTTFNSQPAFGSQGMSGVGTMVTSRPPSPSISTDWQGGGAGALPAGVTSQVPTRGISPSSALDGFGFTSTGSTQLAQPRPQAAVGLTQPAAPRPNGFASDPMFGDVFSATPSLAKQDSLAPASSAGGLPVSSAIGPASTGPQHAVNSSPLAGGLPVSSAIVAVSAGPQHTVTSSPQVSFQSTITQQPTVSQHQQIQPTANQNQVSARNLTTYPSGPANSAVGQTQQPWPRMTQSSVQKYSKVFVEVDTDRDGKITGEQARNLFLSWRLPREILKQVWDLSDQDNDSMLSLREFCVALYLMERYREGRPLPSVLPSGIMLEETQLPASGQLAAPPGNTAWAPTPGLQQSQRMPGARPVHPASGARPPRPGPVPIPLEDEAMQPRQQKPRVPVLEKHLVDQLSSEEQNSLNSKFQEATEADKKVDELEKEIMDSREKIEFYRTKMQELILYKSRCDNRLNEITERVSADKREVEILAKKYEEKYKQSGDVASKLSIEEATFRDIQEKKMELYRAIVKLEEDGSPDGIQVRADRIQLDLEEQVKALNERCKVYGLRGKPTTLVELPFGIFSSILAFTLWFSSLHILVNGWQPGIQEGAADLDEDWDKFEDEGFTFVKEFTLDVQNVIAPPKTKSSLIRDKLSSKDEESTAFSSSNADGKSDSLMAPEEKNGQDESENSRSKESVSRSPPDSPARKNAGENPSYSPSRRNAIDSAFDSPSRKNAVESPFNSPTIRNAMESPTKKFDVSPRKNNGEHSPMSEHGGDKNFDEAGWGAFDTHYDTDAGWDFNPKETNREIHSESSFLGADDWGLNPIKTGSTHTDNTYQKRSSFPFADSVPGTPAYSSVGSPQANNLFQKKGPFGFADSVPSTPMYNSTPMYNSAASPFTNNLFEKKSPFGFADSVPSTPMFNDGLETNSFDTFSRFDSFSLNDGPSFSRFDSMRSTRDSEYDHGFFPPSESSSSFARFDSMRSTQDSDFGPGLTRFDSMRSTSDFGHGFPSFDDTDPFGSSDPFKTTSTIESQTPRRDSDSWRAF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12472	EPS15	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.099
	SRR3591706	second leaf	23.225
	SRR3591707	mature leaf	20.838
	SRR3591708	Shoot apex	29.050
	SRR3591709	Stem	37.079
	SRR3591710	White floral bud	36.800
	SRR3591711	White flower	36.428
	SRR3591712	Green floral bud	39.670
	SRR3591713	Yellow flower	27.408
SRP173429	SRR8316895	Juvenile bud stage	16.771
	SRR8316896	Juvenile bud stage	23.971
	SRR8316897	Juvenile bud stage	12.102
	SRR8316894	Third green stage	10.825
	SRR8316900	Third green stage	28.491
	SRR8316901	Third green stage	29.356
	SRR8316898	Complete white stage	12.664
	SRR8316899	Complete white stage	35.352
	SRR8316903	Complete white stage	26.267
	SRR8316902	Silver flowering stage	13.267
	SRR8316904	Silver flowering stage	20.839
	SRR8316905	Silver flowering stage	8.851
	SRR8316906	Gold flowering stage	29.464
	SRR8316907	Gold flowering stage	28.531
	SRR8316908	Gold flowering stage	31.437
SRP132670	SRR6706286	Control	32.888
	SRR6706287	Light intensity 50%	35.570
	SRR6706288	Light intensity 20%	37.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.667
	CNS0095593	Slightly white alabastrum(diploid) 2	17.041
	CNS0095594	Slightly white alabastrum(diploid) 3	13.542
	CNS0095595	Whole white alabastrum(diploid) 2	13.522
	CNS0095596	Whole white alabastrum(diploid) 3	11.604
	CNS0095597	Whole white alabastrum(diploid) 4	13.242
	CNS0095598	Silvery flower (diploied) 1	18.606
	CNS0095599	Silvery flower (diploied) 2	17.290
	CNS0095600	Silvery flower (diploied) 3	42.502
	CNS0095601	Golden flower (diploid) 1	13.842
	CNS0095602	Golden flower (diploid) 2	39.291
	CNS0095603	Golden flower (diploid) 3	36.478
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.857
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.080
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.391
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.563
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.902
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.490
	CNS0095610	Silvery flower (tetraploid) 1	29.960
	CNS0095611	Silvery flower (tetraploid) 2	28.615
	CNS0095612	Silvery flower (tetraploid) 3	33.636
	CNS0095613	Golden flower (tetraploid) 1	14.594
	CNS0095614	Golden flower (tetraploid) 2	28.102
	CNS0095615	Golden flower (tetraploid) 3	37.828
CRA001975	CRR073297	Stem 1	39.557
	CRR073298	Stem 2	38.677
	CRR073299	Stem 3	36.330
	CRR073300	Leaf 1	45.203
	CRR073301	Leaf 2	42.523
	CRR073302	Leaf 3	32.516
	CRR073303	Juvenile bud 1	44.940
	CRR073304	Juvenile bud 2	37.183
	CRR073305	Juvenile bud 3	59.792
	CRR073306	Third green 1	31.753
	CRR073307	Third green 2	27.508
	CRR073308	Third green 3	34.319
	CRR073309	Second white 1	24.154
	CRR073310	Second white 2	31.896
	CRR073311	Second white 3	35.823
	CRR073312	Silver flowering 1	33.955
	CRR073313	Silver flowering 2	36.544
	CRR073314	Silver flowering 3	33.237
	CRR073315	Gold flowering 1	16.396
	CRR073316	Gold flowering 2	28.870
	CRR073317	Gold flowering 3	19.482
	CRR073318	Tawny withering 1	48.461
	CRR073319	Tawny withering 2	38.897
	CRR073320	Tawny withering 3	51.252