Detail information of GWHGAAZE007683


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009791965.14.14677E-27PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a [Nicotiana sylvestris]
Swissprottr|Q93VJ2|IRE1B_ARATH3E-13Endoribonuclease (Precursor)
trEMBLtr|A0A068TZS7|A0A068TZS7_COFCA2E-26Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01775.1}
TAIR10AT5G24360.20.00000002inositol requiring 1-1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5015148850154598-
GWHAAZE00000002mRNA5015148850154598-
GWHAAZE00000002exon5015148850151520-
GWHAAZE00000002exon5015169550151923-
GWHAAZE00000002exon5015419250154312-
GWHAAZE00000002exon5015458650154598-
GWHAAZE00000002CDS5015458650154598-
GWHAAZE00000002CDS5015419250154312-
GWHAAZE00000002CDS5015169550151923-
GWHAAZE00000002CDS5015148850151520-
Transcript Sequence

Network for GWHGAAZE007683

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01011.22PQQ50830.00021
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08852ERN1 Protein processing in endoplasmic reticulum map04141
Autophagy - animalmap04140
Apoptosismap04210

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.872
SRR3591706second leaf7.276
SRR3591707mature leaf7.036
SRR3591708Shoot apex6.200
SRR3591709Stem9.930
SRR3591710White floral bud7.871
SRR3591711White flower10.814
SRR3591712Green floral bud7.180
SRR3591713Yellow flower5.898
SRP173429 SRR8316895Juvenile bud stage 3.248
SRR8316896Juvenile bud stage 3.771
SRR8316897Juvenile bud stage 1.839
SRR8316894Third green stage 2.621
SRR8316900Third green stage 4.392
SRR8316901Third green stage 7.125
SRR8316898Complete white stage 2.141
SRR8316899Complete white stage 4.672
SRR8316903Complete white stage 6.515
SRR8316902Silver flowering stage2.092
SRR8316904Silver flowering stage5.395
SRR8316905Silver flowering stage3.240
SRR8316906Gold flowering stage 12.459
SRR8316907Gold flowering stage 6.924
SRR8316908Gold flowering stage 12.398
SRP132670SRR6706286Control4.737
SRR6706287Light intensity 50%4.284
SRR6706288Light intensity 20%4.246
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.885
CNS0095593Slightly white alabastrum(diploid) 20.666
CNS0095594Slightly white alabastrum(diploid) 30.576
CNS0095595Whole white alabastrum(diploid) 22.241
CNS0095596Whole white alabastrum(diploid) 30.376
CNS0095597Whole white alabastrum(diploid) 40.474
CNS0095598Silvery flower (diploied) 14.732
CNS0095599Silvery flower (diploied) 24.506
CNS0095600Silvery flower (diploied) 38.153
CNS0095601Golden flower (diploid) 12.807
CNS0095602Golden flower (diploid) 28.147
CNS0095603Golden flower (diploid) 37.186
CNS0095604Slightly white alabastrum(tetraploid) 14.553
CNS0095605Slightly white alabastrum(tetraploid) 20.916
CNS0095606Slightly white alabastrum(tetraploid) 310.001
CNS0095607Whole white alabastrum(tetraploid) 12.100
CNS0095608Whole white alabastrum(tetraploid) 21.406
CNS0095609Whole white alabastrum(tetraploid) 32.325
CNS0095610Silvery flower (tetraploid) 16.540
CNS0095611Silvery flower (tetraploid) 27.576
CNS0095612Silvery flower (tetraploid) 36.537
CNS0095613Golden flower (tetraploid) 13.378
CNS0095614Golden flower (tetraploid) 23.547
CNS0095615Golden flower (tetraploid) 36.385
CRA001975CRR073297Stem 19.389
CRR073298Stem 24.034
CRR073299Stem 34.363
CRR073300Leaf 14.682
CRR073301Leaf 24.578
CRR073302Leaf 35.403
CRR073303Juvenile bud 13.329
CRR073304Juvenile bud 21.623
CRR073305Juvenile bud 33.327
CRR073306Third green 12.545
CRR073307Third green 21.875
CRR073308Third green 33.072
CRR073309Second white 11.241
CRR073310Second white 22.196
CRR073311Second white 34.209
CRR073312Silver flowering 12.253
CRR073313Silver flowering 22.335
CRR073314Silver flowering 34.650
CRR073315Gold flowering 10.936
CRR073316Gold flowering 24.297
CRR073317Gold flowering 30.848
CRR073318Tawny withering 14.342
CRR073319Tawny withering 22.953
CRR073320Tawny withering 33.302