Detail information of GWHGAAZE007688


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276539.13.73898E-82PREDICTED: RING-H2 finger protein ATL80 [Vitis vinifera]
Swissprottr|Q8LC69|ATL8_ARATH4E-64RING-H2 finger protein ATL8
trEMBLtr|D7SWC6|D7SWC6_VITVI1E-82Putative uncharacterized protein {ECO:0000313|EMBL:CBI21575.3}
TAIR10AT1G76410.19E-39RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5027169950272283+
GWHAAZE00000002mRNA5027169950272283+
GWHAAZE00000002exon5027169950272283+
GWHAAZE00000002CDS5027169950272283+
Transcript Sequence

Network for GWHGAAZE007688

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21101531.70E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.805
SRR3591706second leaf50.493
SRR3591707mature leaf27.576
SRR3591708Shoot apex40.291
SRR3591709Stem25.055
SRR3591710White floral bud81.912
SRR3591711White flower39.404
SRR3591712Green floral bud89.424
SRR3591713Yellow flower33.966
SRP173429 SRR8316895Juvenile bud stage 10.500
SRR8316896Juvenile bud stage 16.810
SRR8316897Juvenile bud stage 4.071
SRR8316894Third green stage 10.314
SRR8316900Third green stage 44.928
SRR8316901Third green stage 41.737
SRR8316898Complete white stage 48.080
SRR8316899Complete white stage 92.202
SRR8316903Complete white stage 75.239
SRR8316902Silver flowering stage28.262
SRR8316904Silver flowering stage27.279
SRR8316905Silver flowering stage13.431
SRR8316906Gold flowering stage 53.237
SRR8316907Gold flowering stage 44.002
SRR8316908Gold flowering stage 33.211
SRP132670SRR6706286Control71.231
SRR6706287Light intensity 50%72.854
SRR6706288Light intensity 20%78.003
CNP0000432CNS0095592Slightly white alabastrum(diploid) 148.577
CNS0095593Slightly white alabastrum(diploid) 257.241
CNS0095594Slightly white alabastrum(diploid) 343.190
CNS0095595Whole white alabastrum(diploid) 249.799
CNS0095596Whole white alabastrum(diploid) 360.494
CNS0095597Whole white alabastrum(diploid) 445.961
CNS0095598Silvery flower (diploied) 130.025
CNS0095599Silvery flower (diploied) 218.579
CNS0095600Silvery flower (diploied) 350.521
CNS0095601Golden flower (diploid) 137.362
CNS0095602Golden flower (diploid) 256.475
CNS0095603Golden flower (diploid) 348.215
CNS0095604Slightly white alabastrum(tetraploid) 133.954
CNS0095605Slightly white alabastrum(tetraploid) 236.251
CNS0095606Slightly white alabastrum(tetraploid) 340.053
CNS0095607Whole white alabastrum(tetraploid) 131.425
CNS0095608Whole white alabastrum(tetraploid) 233.866
CNS0095609Whole white alabastrum(tetraploid) 331.283
CNS0095610Silvery flower (tetraploid) 126.648
CNS0095611Silvery flower (tetraploid) 247.451
CNS0095612Silvery flower (tetraploid) 358.115
CNS0095613Golden flower (tetraploid) 117.270
CNS0095614Golden flower (tetraploid) 217.224
CNS0095615Golden flower (tetraploid) 3104.670
CRA001975CRR073297Stem 179.876
CRR073298Stem 289.208
CRR073299Stem 3150.068
CRR073300Leaf 1103.431
CRR073301Leaf 2153.137
CRR073302Leaf 3183.246
CRR073303Juvenile bud 1160.607
CRR073304Juvenile bud 2173.419
CRR073305Juvenile bud 3200.510
CRR073306Third green 146.160
CRR073307Third green 266.081
CRR073308Third green 338.213
CRR073309Second white 137.270
CRR073310Second white 228.010
CRR073311Second white 321.241
CRR073312Silver flowering 137.847
CRR073313Silver flowering 256.709
CRR073314Silver flowering 347.291
CRR073315Gold flowering 1169.204
CRR073316Gold flowering 2182.204
CRR073317Gold flowering 3207.861
CRR073318Tawny withering 181.877
CRR073319Tawny withering 257.839
CRR073320Tawny withering 393.397