Gene detail

Detail information of GWHGAAZE007707

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01738.1	1.6024E-133	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FG33\|LRKS5_ARATH	7E-48	Probable L-type lectin-domain containing receptor kinase S.5 (Precursor)
trEMBL	tr\|M1AJY6\|M1AJY6_SOLTU	2E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400024348}
TAIR10	AT5G06740.1	1E-38	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	50746985	50752226	+
GWHAAZE00000002	mRNA	50746985	50752226	+
GWHAAZE00000002	exon	50746985	50747432	+
GWHAAZE00000002	exon	50749110	50749901	+
GWHAAZE00000002	exon	50751784	50752226	+
GWHAAZE00000002	CDS	50746985	50747432	+
GWHAAZE00000002	CDS	50749110	50749901	+
GWHAAZE00000002	CDS	50751784	50752226	+

Transcript Sequence
>GWHTAAZE007715 ATGGGACTACTCCCGCCCAGATTCATCACCATCTTGATCGTCTTCCTCTTCTTTTTCGCCACCGTTTCTCACTCCGAGAAGCTCAAAACCTTCACCAGAAATTATAGCACCTTCACCAGCGTTGACTACAGCGACCTCAACGTCCAACTACCCGCGACAATCGGCATCGACGCACTCCAGCTTACTCCCGACACCGGTAACAGCCCCAGCGTCTTGGACACAGCCAACAAATCCGGCCGGGTCCTCCTCCATCGACGCTTCAAGCTCTTTCTCGACTCAAACACTAGCCGGATTGCCTCCTTCAATTCCTCGTTCCTCATCAATATCTCCCCTCCAAGAGACAGTACCAGTAAAGGCGAAGGCCTCGCTTTCGTCATCGTTCCCAACCCCGATGTGCCGGTTGCTAGCTACGGCGAGTATTTGGGATTGACCAACTCTTCCCTTAACGGTAACTCATCGAACAAATTCGTGGCAATTGAATTCGATACTCACAAGCAATGGTACGATCCCGACGATAACCATTTAGGCCTAAACATTAACAACGTGGCATCAGTACAAACTGTACCATTGTCTCCTCAAGGAATCGATCTCGCTCCGATGAATGGCAACCCCCGATTCTACAACATTTGGGTGAATTACGATGGAGTTAAGAAAACAATAGAAGTCTACATGAAGGAGCAAAACAAGGACGATCCGACTCCCATGATTCCGAGCACACCATTATTGAAATCAGATCTGAATCTCCGGGAAGTTGTTGATCAAAACTCGTATATCGGATTCTCTGCGTCCACGGGCACTGCTACTCAACTGAACTGCATTCGCCGGTGGAATATAACAGTGGAGTATTTTGACAATAGTGATGAAAGGTTGAAGATTGGTCTCGGTGCTGGGATTCCAGCGGCAGTAGTGGTGGTGATGGTGGCAATATATTGCTTCTGGCGCAAGAGGAGGATGAATAAAGTAATAGCGTCCAGAATAGGTGAGGGGCTGATGAGATTGCCAGGGATGGTTAGAGAGTTTGAGTATGGGGATTTGAAGAAGGCTACTGATAACTTTGATGATAAGTACAAGCTCGGTGAAGGTGGCTATGGCATTGTGTATAGAGGAATTTTACAGAAGGAGAATTTGGAGGTGGCGGTGAAGTGGTTTTCGAGGGAAAGTATGAGGGGGGAAGAGGATTTTCTGGCCGAGCTTACCATCATTAATCGACTCCGCCATAAACACCTAGTTCCATTGCTTGGCAAGGCCACCCAGCTGTCCGACATATACGGGTATGGGGCCGTGTTGTTGGAACTAGTCTGCGGCCAGAAACCCGGAACCAAGATTGGTGGCTACCAAATGTTGGTCGATTGGGTCTGGTCTTTGTACCGGGAAGGGCATGTGCTTGAAGCTGTCGATAAGAAGTTGAGGGGTGAGTTTGTGGCTGAGGAAGCCGAGAGAATTTTGTTACTAGGGATGGCTTGCTCACACCCGATAGCTAGTGAAAGGCCTGAAACGGAGGCGATTGTGCAGATTATAAAGGAGTCGGCTCCGGTCCCACATCTGCCGTATTTCAAGCCGGCTTTTGTGTGGCCGGCTGTTGGTGATCTTAGTCTGACCATTACGACCGATACTGCATCTAGGTGGAGCCTTCAGCATCTCAGCAGAGAGAGTTATTCAGGATACATCGATCGCTCTCTGTAG

Network for GWHGAAZE007707

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	34	283	3.60E-59
PF07714.18	PK_Tyr_Ser-Thr	357	417	1.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004713	molecular_function	protein tyrosine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.145
	SRR3591706	second leaf	0.037
	SRR3591707	mature leaf	0.164
	SRR3591708	Shoot apex	0.162
	SRR3591709	Stem	0.063
	SRR3591710	White floral bud	0.194
	SRR3591711	White flower	0.153
	SRR3591712	Green floral bud	0.188
	SRR3591713	Yellow flower	1.861
SRP173429	SRR8316895	Juvenile bud stage	0.155
	SRR8316896	Juvenile bud stage	0.570
	SRR8316897	Juvenile bud stage	0.134
	SRR8316894	Third green stage	0.311
	SRR8316900	Third green stage	0.299
	SRR8316901	Third green stage	0.305
	SRR8316898	Complete white stage	0.054
	SRR8316899	Complete white stage	0.238
	SRR8316903	Complete white stage	0.189
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.131
	SRR8316905	Silver flowering stage	0.303
	SRR8316906	Gold flowering stage	1.642
	SRR8316907	Gold flowering stage	1.312
	SRR8316908	Gold flowering stage	4.657
SRP132670	SRR6706286	Control	0.983
	SRR6706287	Light intensity 50%	0.701
	SRR6706288	Light intensity 20%	0.447
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.727
	CNS0095593	Slightly white alabastrum(diploid) 2	0.439
	CNS0095594	Slightly white alabastrum(diploid) 3	0.883
	CNS0095595	Whole white alabastrum(diploid) 2	0.262
	CNS0095596	Whole white alabastrum(diploid) 3	0.189
	CNS0095597	Whole white alabastrum(diploid) 4	0.264
	CNS0095598	Silvery flower (diploied) 1	0.624
	CNS0095599	Silvery flower (diploied) 2	0.948
	CNS0095600	Silvery flower (diploied) 3	0.254
	CNS0095601	Golden flower (diploid) 1	0.591
	CNS0095602	Golden flower (diploid) 2	1.121
	CNS0095603	Golden flower (diploid) 3	0.876
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.155
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.247
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.503
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.064
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.269
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.091
	CNS0095610	Silvery flower (tetraploid) 1	0.609
	CNS0095611	Silvery flower (tetraploid) 2	1.133
	CNS0095612	Silvery flower (tetraploid) 3	0.841
	CNS0095613	Golden flower (tetraploid) 1	3.183
	CNS0095614	Golden flower (tetraploid) 2	2.185
	CNS0095615	Golden flower (tetraploid) 3	2.394
CRA001975	CRR073297	Stem 1	0.265
	CRR073298	Stem 2	0.428
	CRR073299	Stem 3	0.499
	CRR073300	Leaf 1	0.220
	CRR073301	Leaf 2	0.469
	CRR073302	Leaf 3	0.132
	CRR073303	Juvenile bud 1	0.237
	CRR073304	Juvenile bud 2	0.287
	CRR073305	Juvenile bud 3	0.103
	CRR073306	Third green 1	0.002
	CRR073307	Third green 2	0.037
	CRR073308	Third green 3	0.192
	CRR073309	Second white 1	0.046
	CRR073310	Second white 2	0.768
	CRR073311	Second white 3	0.383
	CRR073312	Silver flowering 1	7.785
	CRR073313	Silver flowering 2	7.432
	CRR073314	Silver flowering 3	8.873
	CRR073315	Gold flowering 1	0.661
	CRR073316	Gold flowering 2	1.006
	CRR073317	Gold flowering 3	1.223
	CRR073318	Tawny withering 1	12.623
	CRR073319	Tawny withering 2	13.089
	CRR073320	Tawny withering 3	2.138