Gene detail

Detail information of GWHGAAZE007708

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009606157.1	1.9325E-158	PREDICTED: 2-oxoglutarate-dependent dioxygenase DAO-like isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q7XKU5\|DAO_ORYSJ	3E-111	2-oxoglutarate-dependent dioxygenase DAO
trEMBL	tr\|F6I0A4\|F6I0A4_VITVI	1E-155	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60370.1}
TAIR10	AT1G14130.1	2E-95	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	50758623	50761036	-
GWHAAZE00000002	mRNA	50758623	50761036	-
GWHAAZE00000002	exon	50760552	50761036	-
GWHAAZE00000002	exon	50759125	50759440	-
GWHAAZE00000002	exon	50758623	50758871	-
GWHAAZE00000002	five_prime_UTR	50760893	50761036	-
GWHAAZE00000002	CDS	50760552	50760892	-
GWHAAZE00000002	CDS	50759125	50759440	-
GWHAAZE00000002	CDS	50758623	50758871	-

Transcript Sequence
>GWHTAAZE007716 AAGCACACCGCTACTAAAAGTTCATTTAGATGCGGAAAACTAGCTCTAACAATTAAAAGAAAAAGAAGCAGCCATATATATATAATTCAAAAAGTACTCTGCATATTCAACACTTACCTATCAAACACCAATAATATCCAAAAAATGGTCTCCGGCTGCACTATCCCGGCGATCGATCTGAAGGACTTTCCGGCGAAGTTGCCGGAGCTGGTAAAGGCATGCGAGGAATGGGGCTGTTTCAGGCTTCTCAACCAAGGAGACATCCTACCGGAGTCGCTGATGTCGGAGATGAAATCAGTGGTGAGAACACTCTTCGATCTACCGGAAGAAATCAAACGCCGGAATGCTGACGTGATCACCGGAAGTGGGTACGTGGCGCCGTCGGCTATAAATCCACTTTATGAGGCATTTGGATTGTATGACATAGCCTCTGCTCTAGCTGTTGATGCCTTTTGTATCCAATTAAATGCTTCTCCTCTTCAAAGAGAGACAATTGTGAACTATGCACAGGCAGTACATAAGGTGACAATGGAAATTGGGCAAAAATTGGGGGAAGGACTGGGGTTGGCTAGGGTTTCATTTGAGAAATGGCCTTGCCAATTTAGGATAAACAAGTACCATTTTACCCCTCAAGTGATAGGGTCAAGTGGTGTACAAATACACACAGACTCTGGCTTTCTTACCATACTTCAAGATGATGAAGGTGTTGGTGGCCTTGAAGTTATGGACAAGTCGGGTCAATTCCGGCCTGTGGATCCTTGGCCCGGTACCCTCCTTGTCAACCTTGGAGACATTGCCACGGCCTGGAGTAATGGAAGGCTATGTAATGTGAAGCATAGAGTACAATGCTGCGAAGCAACAATTCGAGTGTCAATTGCAACGTTTCTTTTGGGTCCGAAGGAGGAAGAAGTAGAACCACCGCCGGAACTAGTGGACTCTGAACATCCTCGACTGTACGTTCCTTTTACCTATGAAGATTATAGAAAGCTCAGAGCCTCGACAAAGTTGCACGCCGGTGAAGCTCTTGCTCTTGTACGCACCAAGCCATGA

Network for GWHGAAZE007708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	7	76	5.00E-10
PF03171.21	2OG-FeII_Oxy	152	248	2.50E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23947	DAO	Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.901
	SRR3591706	second leaf	1.841
	SRR3591707	mature leaf	0.407
	SRR3591708	Shoot apex	5.679
	SRR3591709	Stem	3.192
	SRR3591710	White floral bud	37.533
	SRR3591711	White flower	46.687
	SRR3591712	Green floral bud	13.683
	SRR3591713	Yellow flower	22.912
SRP173429	SRR8316895	Juvenile bud stage	23.896
	SRR8316896	Juvenile bud stage	42.957
	SRR8316897	Juvenile bud stage	14.504
	SRR8316894	Third green stage	15.104
	SRR8316900	Third green stage	29.065
	SRR8316901	Third green stage	25.988
	SRR8316898	Complete white stage	27.298
	SRR8316899	Complete white stage	13.631
	SRR8316903	Complete white stage	36.098
	SRR8316902	Silver flowering stage	15.844
	SRR8316904	Silver flowering stage	29.141
	SRR8316905	Silver flowering stage	15.269
	SRR8316906	Gold flowering stage	26.002
	SRR8316907	Gold flowering stage	24.888
	SRR8316908	Gold flowering stage	29.651
SRP132670	SRR6706286	Control	32.392
	SRR6706287	Light intensity 50%	27.472
	SRR6706288	Light intensity 20%	24.455
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.546
	CNS0095593	Slightly white alabastrum(diploid) 2	23.532
	CNS0095594	Slightly white alabastrum(diploid) 3	50.390
	CNS0095595	Whole white alabastrum(diploid) 2	23.642
	CNS0095596	Whole white alabastrum(diploid) 3	35.785
	CNS0095597	Whole white alabastrum(diploid) 4	24.887
	CNS0095598	Silvery flower (diploied) 1	26.446
	CNS0095599	Silvery flower (diploied) 2	23.709
	CNS0095600	Silvery flower (diploied) 3	41.390
	CNS0095601	Golden flower (diploid) 1	20.971
	CNS0095602	Golden flower (diploid) 2	27.692
	CNS0095603	Golden flower (diploid) 3	27.450
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.560
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.851
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.635
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.482
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.699
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.739
	CNS0095610	Silvery flower (tetraploid) 1	39.384
	CNS0095611	Silvery flower (tetraploid) 2	25.134
	CNS0095612	Silvery flower (tetraploid) 3	62.675
	CNS0095613	Golden flower (tetraploid) 1	11.856
	CNS0095614	Golden flower (tetraploid) 2	21.961
	CNS0095615	Golden flower (tetraploid) 3	18.544
CRA001975	CRR073297	Stem 1	42.138
	CRR073298	Stem 2	54.516
	CRR073299	Stem 3	44.546
	CRR073300	Leaf 1	19.180
	CRR073301	Leaf 2	25.250
	CRR073302	Leaf 3	38.115
	CRR073303	Juvenile bud 1	6.123
	CRR073304	Juvenile bud 2	19.997
	CRR073305	Juvenile bud 3	5.962
	CRR073306	Third green 1	53.580
	CRR073307	Third green 2	47.384
	CRR073308	Third green 3	46.522
	CRR073309	Second white 1	51.934
	CRR073310	Second white 2	39.618
	CRR073311	Second white 3	19.239
	CRR073312	Silver flowering 1	27.882
	CRR073313	Silver flowering 2	31.477
	CRR073314	Silver flowering 3	32.226
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	2.085
	CRR073317	Gold flowering 3	0.414
	CRR073318	Tawny withering 1	16.127
	CRR073319	Tawny withering 2	21.259
	CRR073320	Tawny withering 3	6.879