Detail information of GWHGAAZE007722


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABB52068.10putative phytoene synthase [Daucus carota subsp. sativus]
Swissprottr|P37272|PSY_CAPAN0Phytoene synthase, chloroplastic (Precursor)
trEMBLtr|Q2VEY0|Q2VEY0_DAUCA0Putative phytoene synthase {ECO:0000313|EMBL:ABB52068.1}
TAIR10AT5G17230.23E-175PHYTOENE SYNTHASE

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5111819651130069-
GWHAAZE00000002mRNA5111819651130069-
GWHAAZE00000002exon5112960451130069-
GWHAAZE00000002exon5112942851129478-
GWHAAZE00000002exon5112693951127111-
GWHAAZE00000002exon5112581751126052-
GWHAAZE00000002exon5112535851125550-
GWHAAZE00000002exon5112443451124607-
GWHAAZE00000002exon5112400251124053-
GWHAAZE00000002exon5112013051120513-
GWHAAZE00000002exon5111945351119625-
GWHAAZE00000002exon5111897251119207-
GWHAAZE00000002exon5111855251118744-
GWHAAZE00000002exon5111819651118420-
GWHAAZE00000002CDS5112960451130069-
GWHAAZE00000002CDS5112942851129478-
GWHAAZE00000002CDS5112693951127111-
GWHAAZE00000002CDS5112581751126052-
GWHAAZE00000002CDS5112535851125550-
GWHAAZE00000002CDS5112443451124607-
GWHAAZE00000002CDS5112400251124053-
GWHAAZE00000002CDS5112013051120513-
GWHAAZE00000002CDS5111945351119625-
GWHAAZE00000002CDS5111897251119207-
GWHAAZE00000002CDS5111855251118744-
GWHAAZE00000002CDS5111819651118420-
Transcript Sequence

Network for GWHGAAZE007722

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00494.20SQS_PSY1494047.30E-72
PF00494.20SQS_PSY5808001.00E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02291crtB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName
GO:0009058biological_processbiosynthetic process
GO:0006696biological_processergosterol biosynthetic process
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0016740molecular_functiontransferase activity
GO:0004310molecular_functionfarnesyl-diphosphate farnesyltransferase activity
GO:0051996molecular_functionsqualene synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.266
SRR3591706second leaf98.340
SRR3591707mature leaf82.153
SRR3591708Shoot apex57.560
SRR3591709Stem47.171
SRR3591710White floral bud8.374
SRR3591711White flower84.682
SRR3591712Green floral bud5.802
SRR3591713Yellow flower179.298
SRP173429 SRR8316895Juvenile bud stage 16.884
SRR8316896Juvenile bud stage 18.873
SRR8316897Juvenile bud stage 8.062
SRR8316894Third green stage 6.348
SRR8316900Third green stage 9.405
SRR8316901Third green stage 10.863
SRR8316898Complete white stage 4.723
SRR8316899Complete white stage 12.799
SRR8316903Complete white stage 10.108
SRR8316902Silver flowering stage35.100
SRR8316904Silver flowering stage37.453
SRR8316905Silver flowering stage27.947
SRR8316906Gold flowering stage 158.836
SRR8316907Gold flowering stage 99.202
SRR8316908Gold flowering stage 89.050
SRP132670SRR6706286Control18.241
SRR6706287Light intensity 50%14.452
SRR6706288Light intensity 20%13.216
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.173
CNS0095593Slightly white alabastrum(diploid) 28.572
CNS0095594Slightly white alabastrum(diploid) 39.123
CNS0095595Whole white alabastrum(diploid) 26.965
CNS0095596Whole white alabastrum(diploid) 33.872
CNS0095597Whole white alabastrum(diploid) 45.392
CNS0095598Silvery flower (diploied) 144.421
CNS0095599Silvery flower (diploied) 242.880
CNS0095600Silvery flower (diploied) 357.160
CNS0095601Golden flower (diploid) 160.679
CNS0095602Golden flower (diploid) 280.723
CNS0095603Golden flower (diploid) 380.253
CNS0095604Slightly white alabastrum(tetraploid) 19.224
CNS0095605Slightly white alabastrum(tetraploid) 26.851
CNS0095606Slightly white alabastrum(tetraploid) 322.488
CNS0095607Whole white alabastrum(tetraploid) 17.170
CNS0095608Whole white alabastrum(tetraploid) 21.737
CNS0095609Whole white alabastrum(tetraploid) 36.722
CNS0095610Silvery flower (tetraploid) 196.866
CNS0095611Silvery flower (tetraploid) 278.977
CNS0095612Silvery flower (tetraploid) 337.709
CNS0095613Golden flower (tetraploid) 178.929
CNS0095614Golden flower (tetraploid) 298.242
CNS0095615Golden flower (tetraploid) 3208.998
CRA001975CRR073297Stem 134.755
CRR073298Stem 228.720
CRR073299Stem 329.607
CRR073300Leaf 121.589
CRR073301Leaf 227.926
CRR073302Leaf 321.289
CRR073303Juvenile bud 119.438
CRR073304Juvenile bud 223.703
CRR073305Juvenile bud 321.942
CRR073306Third green 110.431
CRR073307Third green 29.134
CRR073308Third green 310.126
CRR073309Second white 155.365
CRR073310Second white 273.655
CRR073311Second white 358.768
CRR073312Silver flowering 192.767
CRR073313Silver flowering 279.943
CRR073314Silver flowering 383.195
CRR073315Gold flowering 1120.221
CRR073316Gold flowering 2137.296
CRR073317Gold flowering 374.982
CRR073318Tawny withering 127.439
CRR073319Tawny withering 217.056
CRR073320Tawny withering 323.259