Gene detail

Detail information of GWHGAAZE007723

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269094.3	0	PREDICTED: protein SET DOMAIN GROUP 40 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q6NQJ8\|SDG40_ARATH	0	Protein SET DOMAIN GROUP 40
trEMBL	tr\|A0A067KHN9\|A0A067KHN9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP35711.1}
TAIR10	AT5G17240.1	1E-147	SET domain group 40

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	51138478	51142067	+
GWHAAZE00000002	mRNA	51138478	51142067	+
GWHAAZE00000002	exon	51138478	51138487	+
GWHAAZE00000002	exon	51138584	51138716	+
GWHAAZE00000002	exon	51138811	51138958	+
GWHAAZE00000002	exon	51139851	51139982	+
GWHAAZE00000002	exon	51140137	51140277	+
GWHAAZE00000002	exon	51140823	51141026	+
GWHAAZE00000002	exon	51141429	51142067	+
GWHAAZE00000002	CDS	51138478	51138487	+
GWHAAZE00000002	CDS	51138584	51138716	+
GWHAAZE00000002	CDS	51138811	51138958	+
GWHAAZE00000002	CDS	51139851	51139982	+
GWHAAZE00000002	CDS	51140137	51140277	+
GWHAAZE00000002	CDS	51140823	51141026	+
GWHAAZE00000002	CDS	51141429	51142067	+

Transcript Sequence
>GWHTAAZE007731 ATGCAATTCGAAGTGAACCTCGAAAGGTTCCTCGATTGGGCTGCTAAGCTCGGAATCACAGACTCTCCGGTCGAAATTCAATCGGAAAGTTGTTCCTGTTTGGGACAATCTCTCTCCGTCTCCGATTTTCCCTACGCCGGCGGAAGAGGTATAGGTGCGGTTCGTGATCTTAGAAAAGGCGAATTGATTCTCAGAGTTCCAAAATCGGCATTAATGACGAGTGAAAGTTTGATGAAAGATCATACACTGTCTGTTGCTGTTCGAAACCACTCTTCTCTCTCTCCTATTCAGATACTGACTGTTGCATTGTTGAATGAAGTGTGTAAGGGGAAGAGTTCTTGGTGGTACCCTTATTTAGTGCAATTGCCTCGCAGTTATGATACATTAGCGAGTTTTGGTCTATTTGAGATACAAGCTTTGCAGGTGGATGATGCCATCTGGGCTGCAGAAAAGGCTGTATCAAAGGCTGAATTGGAATGGAAAAATGCAATTGCACTTATGGAAGAACTTAGGCTCAAGCCTCAACTTGTTACATTTAGGGCGTGGCTATGGGCTTCTGCAACTATATCTTCCCGCACGTTGCATGTGCCGTGGGACGATGCTGGCTGTTTATGTCCGGTGGGGGACTTCTTCAATTATGCTGCACCAGAGGAATCAGATGTGGAGCAGTTTGAGTCTAACTCACTGAGGTTGACTGATGGTGGGTACAATGAAGATATCAGTGCCTATTGTTTCTATGCTAAAACGAACTATGCAAGAGGAGACCAGGTTCTTCTTAGCTATGGTACATACACGAACTTGGAGCTTCTTGAACACTACGGTTTTCTTTTAACCGAAAACCCAAATGACAAAGCTTTTATTCCTTTATTGCCCAAGATGATCTCCCTACGTTCGTGGCCCAATGACTCCCTATACATTCACCAAAACGGTAAGCCATCCTTCGCCCTGCTCTCGACTGTACGATTATGGGCGACCCCACCAAACCATCGAAGATCCATTGGATACCTCGCTTATTCAGGATCTCAAGTATCAACAACGAATGAGGTAATTGTGATGGAATGGATGTTAAACAATTGCCAAGTTATTTTGAAGAATTTTGTAACATCGGTTGAGGAAGACGAGTTATTGCTCAAAACCATTGACAAAATGTGTGATTTGAATGAACTGATTGAGATAGAGAAGGTGGTGTCGGGGTTTAAAGCTGAGATTTGCGCTTTCCTGGAAATTAATGGTGCTGGTGAGAAGTTAAATTTATGTGGGAAGACGAGGCGGGTAATCGATAGATGGAAATTGGCAGTTGAATGGAGACTGAGGTACAAAAAAATTCTCGTTGATTGTATTTCATATTGTAGTGAGAGATTAGATTGGTTTTCTTCCCAAGATGATTCCAAGAGAACTGATAGGTGA

Network for GWHGAAZE007723

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	48	262	7.20E-09
PF09273.12	Rubis-subs-bind	313	443	9.30E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.157
	SRR3591706	second leaf	3.952
	SRR3591707	mature leaf	2.507
	SRR3591708	Shoot apex	9.463
	SRR3591709	Stem	6.239
	SRR3591710	White floral bud	4.068
	SRR3591711	White flower	7.117
	SRR3591712	Green floral bud	5.674
	SRR3591713	Yellow flower	6.063
SRP173429	SRR8316895	Juvenile bud stage	9.521
	SRR8316896	Juvenile bud stage	11.935
	SRR8316897	Juvenile bud stage	2.813
	SRR8316894	Third green stage	4.647
	SRR8316900	Third green stage	13.677
	SRR8316901	Third green stage	11.149
	SRR8316898	Complete white stage	4.229
	SRR8316899	Complete white stage	12.068
	SRR8316903	Complete white stage	5.462
	SRR8316902	Silver flowering stage	8.565
	SRR8316904	Silver flowering stage	10.534
	SRR8316905	Silver flowering stage	5.936
	SRR8316906	Gold flowering stage	21.296
	SRR8316907	Gold flowering stage	16.639
	SRR8316908	Gold flowering stage	10.431
SRP132670	SRR6706286	Control	6.302
	SRR6706287	Light intensity 50%	5.966
	SRR6706288	Light intensity 20%	6.721
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.701
	CNS0095593	Slightly white alabastrum(diploid) 2	10.110
	CNS0095594	Slightly white alabastrum(diploid) 3	11.837
	CNS0095595	Whole white alabastrum(diploid) 2	12.246
	CNS0095596	Whole white alabastrum(diploid) 3	12.401
	CNS0095597	Whole white alabastrum(diploid) 4	9.629
	CNS0095598	Silvery flower (diploied) 1	10.208
	CNS0095599	Silvery flower (diploied) 2	9.435
	CNS0095600	Silvery flower (diploied) 3	11.261
	CNS0095601	Golden flower (diploid) 1	11.813
	CNS0095602	Golden flower (diploid) 2	9.949
	CNS0095603	Golden flower (diploid) 3	11.438
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.722
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.820
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.153
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.138
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.535
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.377
	CNS0095610	Silvery flower (tetraploid) 1	5.467
	CNS0095611	Silvery flower (tetraploid) 2	6.860
	CNS0095612	Silvery flower (tetraploid) 3	4.101
	CNS0095613	Golden flower (tetraploid) 1	4.134
	CNS0095614	Golden flower (tetraploid) 2	6.268
	CNS0095615	Golden flower (tetraploid) 3	5.338
CRA001975	CRR073297	Stem 1	14.265
	CRR073298	Stem 2	12.644
	CRR073299	Stem 3	9.487
	CRR073300	Leaf 1	13.245
	CRR073301	Leaf 2	12.287
	CRR073302	Leaf 3	11.475
	CRR073303	Juvenile bud 1	9.717
	CRR073304	Juvenile bud 2	5.027
	CRR073305	Juvenile bud 3	6.962
	CRR073306	Third green 1	2.795
	CRR073307	Third green 2	2.249
	CRR073308	Third green 3	2.360
	CRR073309	Second white 1	3.463
	CRR073310	Second white 2	4.349
	CRR073311	Second white 3	2.795
	CRR073312	Silver flowering 1	4.143
	CRR073313	Silver flowering 2	3.962
	CRR073314	Silver flowering 3	4.862
	CRR073315	Gold flowering 1	4.548
	CRR073316	Gold flowering 2	7.376
	CRR073317	Gold flowering 3	2.224
	CRR073318	Tawny withering 1	8.396
	CRR073319	Tawny withering 2	8.662
	CRR073320	Tawny withering 3	9.479