Gene detail

Detail information of GWHGAAZE007731

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002285267.1	PREDICTED: glutamate decarboxylase 1 [Vitis vinifera]
Swissprot	tr\|Q42521\|DCE1_ARATH	Glutamate decarboxylase 1
trEMBL	tr\|F6HF90\|F6HF90_VITVI	Glutamate decarboxylase {ECO:0000256\|RuleBase:RU361171}
TAIR10	AT5G17330.1	glutamate decarboxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	51305722	51315645	+
GWHAAZE00000002	mRNA	51305722	51315645	+
GWHAAZE00000002	exon	51305722	51305832	+
GWHAAZE00000002	exon	51305945	51306149	+
GWHAAZE00000002	exon	51312257	51312457	+
GWHAAZE00000002	exon	51313748	51313962	+
GWHAAZE00000002	exon	51314545	51314798	+
GWHAAZE00000002	exon	51314901	51314953	+
GWHAAZE00000002	exon	51315166	51315645	+
GWHAAZE00000002	five_prime_UTR	51305722	51305746	+
GWHAAZE00000002	CDS	51305747	51305832	+
GWHAAZE00000002	CDS	51305945	51306149	+
GWHAAZE00000002	CDS	51312257	51312457	+
GWHAAZE00000002	CDS	51313748	51313962	+
GWHAAZE00000002	CDS	51314545	51314798	+
GWHAAZE00000002	CDS	51314901	51314953	+
GWHAAZE00000002	CDS	51315166	51315645	+

Transcript Sequence
>GWHTAAZE007739 TTCGATCTTGAGATCTCTATTCGCGATGGTTCTATCTCAGACTGTAAAAGAGAGCGATGATTCCATCCACTCAACTTTTGCCTCTCGATACGTTCGCGTCTCACTCCCCAGATTCAAAATGCCGACAAATTCAATACCAAAGGAAGCGGCGTATCAAATAATAAACGACGAGCTGATGTTGGATGGAAATCCGAGGCTGAATCTTGCGTCGTTCGTAACGACATGGATGGAACCAGAGTGCGATAAGCTAATGATGGCCTCTATTAACAAAAATTACGTCGACATGGATGAATATCCTGTCACCACTGAACTACAGAATAGGTGTGTGAACATGATAGCACACCTGTTTAATGCACCACTAGGAGAAGGGGAGGCAGCAGTGGGAGTAGGAACAGTAGGTTCTTCGGAGGCAATAATGCTGGCTGGTTTGGCTTTCAAGAGGAAATGGCAGAACAAGATGAAGGCCGCGGGCAAATCCTGTGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGTTGAGGGATGGGTACTTTGTAATGGACCCAGAGAAAGCTGTGGAGATGGTGGATGAGAACACCATCTGTGTTGCTGCTATCTTGGGCTCCACTCTCAATGGCGAATTTGAAGATGTCAAGCTCTTGAATGACCTCTTGGTGGAAAAAAACTCCCAAACCGGATGGGATACACCAATTCATGTGGATGCAGCAAGTGGAGGGTTCATAGCACCGTTCCTATACCCAGAGCTGGAGTGGGATTTCAGGTTGCCACAAGTGAAGAGTATTAATGTGAGTGGGCACAAATATGGGCTTGTTTATGCTGGTGTTGGTTGGGTCATTTGGAGGAGCAAAGAGGACTTGCCTGATGAGCTCATCTTTCATATTAATTATCTTGGTGCTGATCAACCCACTTTCACGCTCAACTTCTCCAAAGGGTCTAGCCAAGTAATTGCTCAGTACTATCAACTAATACGCTTGGGATTTGAGGGCTACAAGAACATAATGGAAAATTGCCAAGAAAACGCAGTGGTACTAAGAGAAAGACTAGAGGAGACAGGCAAATTCAATATCATATCAAAGGACAATGGGGTCCCACTAGTGGCATTCTCCCTCAAGGACAACAGTTGTCACAACGAATTCGAAGTGTCGGATTTACTCCGGCGCTTTGGATGGATTGTACCAGCATATACCATGCCGCCAGACGCGCAGCACGTGACAGTACTGCGTGTGGTGATACGGGAAGACTTTTCCCGTACACTAGCCGAGAGGCTCGTGAATGACATTGAGAAGGTCCTTCTAGAGCTTGATGCACTCCCAGCTAGGGTTAGTGCCAAGCTCACGGCCCATGAAGAGAGTGGGGGTGGGTCTGTGTTTGGGAAGAAGAGTGATATTGAGGTGCAGAGGGAGATTACTACTGCTTGGAAGAAGTTTGTGGCTGAAAGGAAGAAGACTAGTGGGGTTTGTTAG

Network for GWHGAAZE007731

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00282.20	Pyridoxal_deC	33	381	4.90E-110

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01580	E4.1.1.15, gadB, gadA, GAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Butanoate metabolism	map00650
		Alanine, aspartate and glutamate metabolism	map00250
		beta-Alanine metabolism	map00410
		Taurine and hypotaurine metabolism	map00430
		Quorum sensing	map02024
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name
GO:0006536	biological_process	glutamate metabolic process
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004351	molecular_function	glutamate decarboxylase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0016831	molecular_function	carboxy-lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.424
	SRR3591706	second leaf	0.240
	SRR3591707	mature leaf	0.361
	SRR3591708	Shoot apex	0.600
	SRR3591709	Stem	0.216
	SRR3591710	White floral bud	13.341
	SRR3591711	White flower	2.911
	SRR3591712	Green floral bud	160.989
	SRR3591713	Yellow flower	24.802
SRP173429	SRR8316895	Juvenile bud stage	3.840
	SRR8316896	Juvenile bud stage	42.953
	SRR8316897	Juvenile bud stage	27.477
	SRR8316894	Third green stage	25.935
	SRR8316900	Third green stage	114.851
	SRR8316901	Third green stage	122.237
	SRR8316898	Complete white stage	0.287
	SRR8316899	Complete white stage	0.746
	SRR8316903	Complete white stage	0.304
	SRR8316902	Silver flowering stage	0.105
	SRR8316904	Silver flowering stage	0.386
	SRR8316905	Silver flowering stage	0.034
	SRR8316906	Gold flowering stage	0.302
	SRR8316907	Gold flowering stage	0.812
	SRR8316908	Gold flowering stage	0.189
SRP132670	SRR6706286	Control	66.644
	SRR6706287	Light intensity 50%	56.417
	SRR6706288	Light intensity 20%	53.120
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.399
	CNS0095593	Slightly white alabastrum(diploid) 2	25.036
	CNS0095594	Slightly white alabastrum(diploid) 3	50.366
	CNS0095595	Whole white alabastrum(diploid) 2	54.948
	CNS0095596	Whole white alabastrum(diploid) 3	67.157
	CNS0095597	Whole white alabastrum(diploid) 4	46.067
	CNS0095598	Silvery flower (diploied) 1	0.455
	CNS0095599	Silvery flower (diploied) 2	1.033
	CNS0095600	Silvery flower (diploied) 3	0.904
	CNS0095601	Golden flower (diploid) 1	0.636
	CNS0095602	Golden flower (diploid) 2	2.341
	CNS0095603	Golden flower (diploid) 3	2.829
	CNS0095604	Slightly white alabastrum(tetraploid) 1	94.622
	CNS0095605	Slightly white alabastrum(tetraploid) 2	77.514
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.059
	CNS0095607	Whole white alabastrum(tetraploid) 1	109.383
	CNS0095608	Whole white alabastrum(tetraploid) 2	127.907
	CNS0095609	Whole white alabastrum(tetraploid) 3	126.611
	CNS0095610	Silvery flower (tetraploid) 1	0.040
	CNS0095611	Silvery flower (tetraploid) 2	0.586
	CNS0095612	Silvery flower (tetraploid) 3	1.682
	CNS0095613	Golden flower (tetraploid) 1	1.238
	CNS0095614	Golden flower (tetraploid) 2	1.137
	CNS0095615	Golden flower (tetraploid) 3	1.434
CRA001975	CRR073297	Stem 1	12.216
	CRR073298	Stem 2	22.163
	CRR073299	Stem 3	10.167
	CRR073300	Leaf 1	34.700
	CRR073301	Leaf 2	43.200
	CRR073302	Leaf 3	36.206
	CRR073303	Juvenile bud 1	34.675
	CRR073304	Juvenile bud 2	40.937
	CRR073305	Juvenile bud 3	1.496
	CRR073306	Third green 1	6.967
	CRR073307	Third green 2	10.138
	CRR073308	Third green 3	6.298
	CRR073309	Second white 1	1.403
	CRR073310	Second white 2	1.271
	CRR073311	Second white 3	1.572
	CRR073312	Silver flowering 1	9.585
	CRR073313	Silver flowering 2	9.100
	CRR073314	Silver flowering 3	5.070
	CRR073315	Gold flowering 1	7.926
	CRR073316	Gold flowering 2	1.417
	CRR073317	Gold flowering 3	4.927
	CRR073318	Tawny withering 1	8.655
	CRR073319	Tawny withering 2	7.028
	CRR073320	Tawny withering 3	6.595