Gene detail

Detail information of GWHGAAZE007735

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01675.1	2.0111E-113	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GWR0\|COX11_ARATH	2E-99	Cytochrome c oxidase assembly protein COX11, mitochondrial (Precursor)
trEMBL	tr\|A0A068TZH9\|A0A068TZH9_COFCA	8E-114	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01675.1}
TAIR10	AT1G02410.1	9E-81	cytochrome c oxidase assembly protein CtaG / Cox11 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	51379931	51386115	-
GWHAAZE00000002	mRNA	51379931	51386115	-
GWHAAZE00000002	exon	51386033	51386115	-
GWHAAZE00000002	exon	51385032	51385395	-
GWHAAZE00000002	exon	51384446	51384498	-
GWHAAZE00000002	exon	51383557	51383629	-
GWHAAZE00000002	exon	51383106	51383210	-
GWHAAZE00000002	exon	51379931	51380053	-
GWHAAZE00000002	CDS	51386033	51386115	-
GWHAAZE00000002	CDS	51385032	51385395	-
GWHAAZE00000002	CDS	51384446	51384498	-
GWHAAZE00000002	CDS	51383557	51383629	-
GWHAAZE00000002	CDS	51383106	51383210	-
GWHAAZE00000002	CDS	51379931	51380053	-

Transcript Sequence
>GWHTAAZE007743 ATGTCATGGACCAGGCTTTGTAGAATAAGCAACCTATTGCCTTCCCTTAACAACTCTATACACAATGCCTCTTCTGAGTTCAGGTGTTTTCTTGAAGCCGGCCAGAGATATAGTTTTGTGGGAGCTAGTAAAACTACTATACACAGGCGAGCTTTTGATTTTAAATTCCAGAAGTTTTCATCAAGATGTGAACGTAGCAGGGTTTCATTTGAGAAGTGCAATCAATTTTCAAAATTAAGAACTCAGAGTTGGGAGAGGCCTTGTTCTTTGCTTGGTTTCCATCACGAATATACTACCCATGCCGCAAGAGAAAAGAAATCACAGAAGACGCTTTTATATTTAACGGGGTTGGTCTTTGCAATGGTGGGGTGTACTTACGCTGCAGTTCCTTTATATAGGAGATTCTGCCAAGCTACAGGGTATGGGGGCACTGTTCAACGTCGTGAGAGTGTGGAAGAAAAGATTGCTCGACATTCTCAAGACGGAACTATCACAAACAGGGAGATTGTGGTGCAGTTCAATGCTGATGTTGCTGATGGAATGCCTTGGAAGTTTATTCCTACACAAAGAGAGGTGAGGGTAAAGCCAGGAGAGAGTGCTCTTGCATTTTACACGGCTGAGAATCGAAGTTCAACTCCTATTACTGGCATGTCTACATATAATGTTACCCCTATGAAGGCTGCAGTTTACTTCAACAAAATACAGTGTTTTTGCTTCGAGGAGCAGCGGCTTCTTCCTGGAGAGCAGATTGACATGCCTGTAAGTAAAACCTCCTCCTTTGCTCACAGTTTTAACTTTTAG

Network for GWHGAAZE007735

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04442.15	CtaG_Cox11	128	254	1.10E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02258	COX11, ctaG	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005507	molecular_function	copper ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.616
	SRR3591706	second leaf	6.761
	SRR3591707	mature leaf	7.827
	SRR3591708	Shoot apex	10.190
	SRR3591709	Stem	8.024
	SRR3591710	White floral bud	6.437
	SRR3591711	White flower	9.258
	SRR3591712	Green floral bud	9.496
	SRR3591713	Yellow flower	5.894
SRP173429	SRR8316895	Juvenile bud stage	10.433
	SRR8316896	Juvenile bud stage	16.983
	SRR8316897	Juvenile bud stage	6.630
	SRR8316894	Third green stage	6.419
	SRR8316900	Third green stage	18.908
	SRR8316901	Third green stage	16.855
	SRR8316898	Complete white stage	7.168
	SRR8316899	Complete white stage	21.014
	SRR8316903	Complete white stage	11.198
	SRR8316902	Silver flowering stage	7.892
	SRR8316904	Silver flowering stage	11.198
	SRR8316905	Silver flowering stage	5.676
	SRR8316906	Gold flowering stage	19.917
	SRR8316907	Gold flowering stage	21.388
	SRR8316908	Gold flowering stage	12.934
SRP132670	SRR6706286	Control	6.363
	SRR6706287	Light intensity 50%	7.179
	SRR6706288	Light intensity 20%	8.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.328
	CNS0095593	Slightly white alabastrum(diploid) 2	18.059
	CNS0095594	Slightly white alabastrum(diploid) 3	17.773
	CNS0095595	Whole white alabastrum(diploid) 2	18.691
	CNS0095596	Whole white alabastrum(diploid) 3	15.474
	CNS0095597	Whole white alabastrum(diploid) 4	14.523
	CNS0095598	Silvery flower (diploied) 1	17.635
	CNS0095599	Silvery flower (diploied) 2	12.827
	CNS0095600	Silvery flower (diploied) 3	12.414
	CNS0095601	Golden flower (diploid) 1	16.316
	CNS0095602	Golden flower (diploid) 2	10.779
	CNS0095603	Golden flower (diploid) 3	12.523
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.379
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.523
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.324
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.349
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.900
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.211
	CNS0095610	Silvery flower (tetraploid) 1	9.504
	CNS0095611	Silvery flower (tetraploid) 2	7.822
	CNS0095612	Silvery flower (tetraploid) 3	9.022
	CNS0095613	Golden flower (tetraploid) 1	4.410
	CNS0095614	Golden flower (tetraploid) 2	6.691
	CNS0095615	Golden flower (tetraploid) 3	6.494
CRA001975	CRR073297	Stem 1	7.757
	CRR073298	Stem 2	7.652
	CRR073299	Stem 3	4.328
	CRR073300	Leaf 1	8.501
	CRR073301	Leaf 2	9.712
	CRR073302	Leaf 3	3.823
	CRR073303	Juvenile bud 1	7.731
	CRR073304	Juvenile bud 2	3.526
	CRR073305	Juvenile bud 3	3.327
	CRR073306	Third green 1	2.402
	CRR073307	Third green 2	2.778
	CRR073308	Third green 3	1.582
	CRR073309	Second white 1	1.544
	CRR073310	Second white 2	3.120
	CRR073311	Second white 3	3.327
	CRR073312	Silver flowering 1	3.497
	CRR073313	Silver flowering 2	0.785
	CRR073314	Silver flowering 3	2.146
	CRR073315	Gold flowering 1	6.330
	CRR073316	Gold flowering 2	7.122
	CRR073317	Gold flowering 3	2.749
	CRR073318	Tawny withering 1	7.680
	CRR073319	Tawny withering 2	5.897
	CRR073320	Tawny withering 3	6.706