Gene detail

Detail information of GWHGAAZE007740

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011085909.1	2.6415E-172	PREDICTED: cysteine-rich receptor-like protein kinase 2 [Sesamum indicum]
Swissprot	tr\|Q9CAL3\|CRK2_ARATH	4E-45	Cysteine-rich receptor-like protein kinase 2 (Precursor)
trEMBL	tr\|W9QZL7\|W9QZL7_9ROSA	2E-165	Cysteine-rich receptor-like protein kinase 3 {ECO:0000313\|EMBL:EXB46019.1}
TAIR10	AT1G70520.1	9E-41	cysteine-rich RLK (RECEPTOR-like protein kinase) 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	51490616	51498875	+
GWHAAZE00000002	mRNA	51490616	51498875	+
GWHAAZE00000002	exon	51490616	51490982	+
GWHAAZE00000002	exon	51493910	51494266	+
GWHAAZE00000002	exon	51495128	51495253	+
GWHAAZE00000002	exon	51495923	51496050	+
GWHAAZE00000002	exon	51496952	51497162	+
GWHAAZE00000002	exon	51497510	51497571	+
GWHAAZE00000002	exon	51498561	51498875	+
GWHAAZE00000002	CDS	51490616	51490982	+
GWHAAZE00000002	CDS	51493910	51494266	+
GWHAAZE00000002	CDS	51495128	51495253	+
GWHAAZE00000002	CDS	51495923	51496050	+
GWHAAZE00000002	CDS	51496952	51497162	+
GWHAAZE00000002	CDS	51497510	51497571	+
GWHAAZE00000002	CDS	51498561	51498875	+

Transcript Sequence
>GWHTAAZE007748 ATGTTGACCACCACAACAAGGCAGAGCCCGTGGTGGTTACCGGTGGCGGCCCTTATCCTCCTCCTTATATACGCTACAAAACCAGCAGCATCACAACCACAAACAAATTTGTTAAACAGTGGGTGCAGTCAATATAACGCTACAGATTTGTCAAGTTTTTTTAGCAACCTTAATGGTACATTTTCAGACTTAAGGAGTCAATTATCGAGTGGTAACACACGGTTTGCCACAGCCCAGCAGGCTAGGAACTCAGATCCCGTCTACGGGTTGGCTCAGTGCCGTGACTACCTCTCCACTGTCGATTGTTTGGCATGTTTCGATGCCTCCGTGAGGCAGATTCGCAATTGCTCTGCCGCTAATGGTGCCCGCAATGTCGGATTATGCGGAAATCGAACAATTTCTCAGGCAACCGCGTTTAATACGGCAGTACGAGGATTGTTATCGGACCTCGTTGTTGCAACTCCTAGGATTAATGGTTATTTTGCTGCGTCTACTAGGGCAGCAGTTGGCGCCAATTTAACGGTGTATGCAGTGGCGCAGTGTGCCCAAACAGTGACTCGTAGTGGGTGCTTAGATTGCTTGACAGTGGCATATTCCAATATTCAGAATTGCCCTCCTAATGCTGATGGAAGGTCTGTTGATGCTGGTTGTTTCTTGAGGTATTCTGATACTTCGTTTTTTCCAGCCAACCAAACAACTAATATCACTCCTTTCTTGGGCGGAGGAGGTTCATCAAACAAGAAGAAAGCCATAATTGGGGGTGTGGTTGGTGGTGGAGGGTTTCTTTTGCTCATACTCGCTTTCTTTTTGTGGTATACTCTATCAAAGAAGCCCAATGATGCTAGAAGAGGAAATATATTGGGGGCAACAGAGCTACAAGGCCCAAATAATTATAGTTACAATGATTTGAAATCAGCTACCAAAAATTTCAGTCAAGAATACAAATTAGGAGAAGGTGGCTTTGGAGATGTGTTCAAGGGAATACTAAAGAATGGGAATGTAGTGGCAGTGAAGAGAATAGCAATGTCCTCAACCAGAGCAAATACAGAATTTGAAACTGAGGTTAGGCTAATAAGCAATGTTCATCATCGAAATCTTATTCGTCTATTAGGCTGTTGCAGCAAATCTTCAGAGCTTCTTCTTGTCCTAGAATACATGGCCAATGGTAGCCTTGATAAATTTTTGTATGATAATTACTATATATTGTTGTACACAATGAAAATTAAAGTCCATGATGGAAACATACTGCAGGCATGGAAATTGTATGAGAATGACATGCATTTGAAGCTAGTAGATGAGACACTAGACCCAAATGAATACACACCAGAAGAGGCAAAGAGGATCATTGAAATTGCTCTAATGTGCACTCAATCCCCTGTTTCTTTGAGGCCAACTATGTCTGAAGTAGTTGTTTCTCTTTCCGGTGACCGATCCCTTGATGGAAAACCAACCAGCCGCCCTTCTTTTGTTGACTCTGAACGCAGGGTTTTGAATACTACATCGACGTCCACTACTTCAAGTAATACTAATGCCACTGCCTCTTTTACCGAGTTTACTGGTCGTTAG

Network for GWHGAAZE007740

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01657.18	Stress-antifung	42	123	7.70E-11
PF01657.18	Stress-antifung	131	223	7.90E-13
PF07714.18	PK_Tyr_Ser-Thr	313	398	7.50E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.501
	SRR3591706	second leaf	1.495
	SRR3591707	mature leaf	20.254
	SRR3591708	Shoot apex	0.026
	SRR3591709	Stem	3.261
	SRR3591710	White floral bud	27.451
	SRR3591711	White flower	7.786
	SRR3591712	Green floral bud	1.978
	SRR3591713	Yellow flower	8.028
SRP173429	SRR8316895	Juvenile bud stage	0.220
	SRR8316896	Juvenile bud stage	0.223
	SRR8316897	Juvenile bud stage	0.206
	SRR8316894	Third green stage	0.145
	SRR8316900	Third green stage	0.509
	SRR8316901	Third green stage	0.449
	SRR8316898	Complete white stage	5.675
	SRR8316899	Complete white stage	1.885
	SRR8316903	Complete white stage	7.588
	SRR8316902	Silver flowering stage	8.061
	SRR8316904	Silver flowering stage	14.092
	SRR8316905	Silver flowering stage	5.917
	SRR8316906	Gold flowering stage	19.192
	SRR8316907	Gold flowering stage	15.646
	SRR8316908	Gold flowering stage	25.648
SRP132670	SRR6706286	Control	1.292
	SRR6706287	Light intensity 50%	1.569
	SRR6706288	Light intensity 20%	0.895
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.494
	CNS0095593	Slightly white alabastrum(diploid) 2	0.640
	CNS0095594	Slightly white alabastrum(diploid) 3	0.551
	CNS0095595	Whole white alabastrum(diploid) 2	0.212
	CNS0095596	Whole white alabastrum(diploid) 3	0.631
	CNS0095597	Whole white alabastrum(diploid) 4	0.413
	CNS0095598	Silvery flower (diploied) 1	2.941
	CNS0095599	Silvery flower (diploied) 2	1.740
	CNS0095600	Silvery flower (diploied) 3	4.500
	CNS0095601	Golden flower (diploid) 1	1.474
	CNS0095602	Golden flower (diploid) 2	4.513
	CNS0095603	Golden flower (diploid) 3	4.041
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.412
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.140
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.703
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.419
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.717
	CNS0095610	Silvery flower (tetraploid) 1	4.641
	CNS0095611	Silvery flower (tetraploid) 2	3.393
	CNS0095612	Silvery flower (tetraploid) 3	16.960
	CNS0095613	Golden flower (tetraploid) 1	1.018
	CNS0095614	Golden flower (tetraploid) 2	5.727
	CNS0095615	Golden flower (tetraploid) 3	4.283
CRA001975	CRR073297	Stem 1	0.325
	CRR073298	Stem 2	0.567
	CRR073299	Stem 3	0.624
	CRR073300	Leaf 1	1.321
	CRR073301	Leaf 2	0.642
	CRR073302	Leaf 3	0.569
	CRR073303	Juvenile bud 1	1.129
	CRR073304	Juvenile bud 2	4.963
	CRR073305	Juvenile bud 3	1.333
	CRR073306	Third green 1	30.447
	CRR073307	Third green 2	34.397
	CRR073308	Third green 3	40.319
	CRR073309	Second white 1	16.305
	CRR073310	Second white 2	18.711
	CRR073311	Second white 3	15.694
	CRR073312	Silver flowering 1	9.346
	CRR073313	Silver flowering 2	7.754
	CRR073314	Silver flowering 3	8.764
	CRR073315	Gold flowering 1	29.762
	CRR073316	Gold flowering 2	45.706
	CRR073317	Gold flowering 3	26.522
	CRR073318	Tawny withering 1	9.279
	CRR073319	Tawny withering 2	6.680
	CRR073320	Tawny withering 3	2.817