Gene detail

Detail information of GWHGAAZE007748

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263272.2	0	PREDICTED: tRNA threonylcarbamoyladenosine dehydratase isoform X1 [Vitis vinifera]
Swissprot	tr\|Q6K6K7\|UBA5_ORYSJ	2E-11	Ubiquitin-like modifier-activating enzyme 5
trEMBL	tr\|A0A067KXZ4\|A0A067KXZ4_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP39833.1}
TAIR10	AT5G37530.2	0	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	51743398	51760698	+
GWHAAZE00000002	mRNA	51743398	51760698	+
GWHAAZE00000002	exon	51743398	51743489	+
GWHAAZE00000002	exon	51744657	51744700	+
GWHAAZE00000002	exon	51748793	51748901	+
GWHAAZE00000002	exon	51749723	51749870	+
GWHAAZE00000002	exon	51751390	51751602	+
GWHAAZE00000002	exon	51754166	51754300	+
GWHAAZE00000002	exon	51755438	51755572	+
GWHAAZE00000002	exon	51756303	51756518	+
GWHAAZE00000002	exon	51759037	51759161	+
GWHAAZE00000002	exon	51760050	51760107	+
GWHAAZE00000002	exon	51760251	51760698	+
GWHAAZE00000002	CDS	51743398	51743489	+
GWHAAZE00000002	CDS	51744657	51744700	+
GWHAAZE00000002	CDS	51748793	51748901	+
GWHAAZE00000002	CDS	51749723	51749870	+
GWHAAZE00000002	CDS	51751390	51751602	+
GWHAAZE00000002	CDS	51754166	51754300	+
GWHAAZE00000002	CDS	51755438	51755572	+
GWHAAZE00000002	CDS	51756303	51756518	+
GWHAAZE00000002	CDS	51759037	51759161	+
GWHAAZE00000002	CDS	51760050	51760107	+
GWHAAZE00000002	CDS	51760251	51760361	+
GWHAAZE00000002	three_prime_UTR	51760362	51760698	+

Transcript Sequence
>GWHTAAZE007756 ATGGTAGACCGAGCGAAGTATTTAACATTAATTGGTGCTGGAGCTCTATTGGGTTCTGTTACCACCATTGCCTTTCTCAAGCTTCTCCCCAGAAAGGTTGCAGATCAATGCGTTAAAAGGGCAATCGAATATGATGGTAAAGGATCGGTATCCACTACTTCTGTGAGAGGCCTCGGGGATGAGAATAATGGGGTGGCTGGCTTTGACCTACTAAAAGATGAAATAGTTTCTGAACAGCTTACAAGGAATATTCAGTTCTTTGGACTTGAATCCCAACAGAAAGTGACTGCGTCTTATGTTGTAGTTATTGGTCTTGGTGGGGTTGGGAGTCATGCTGCATCCATGCTTTTGAGATCAGGGGTGGGCAGGCTCCTCCTTGTGGATTTTGACCAGGTGTCACTGTCATCTTTAAATCGACATGCTGTTGCAACAAGGGAGGATGTTGGTACACCTAAAGCTCAATGCCTCAAGAAGCACTTCTCATCAATTTTCCCAGAGAGCCACATAGATGCAAAAGTGATATTATATGATGCTTCCTCTGAGGCAGAAATTCTTTCTGGCAACCCTGATTTTGTTCTCGACTGTATTGATAACATCGACACAAAGGTGGCACTTCTTGCTGCATGTGTACGTAGGGGTTTAAAGGTTCTATCTGCAACAGGGGCTGGGGCAAGAGCTGATCCAACAAGAATCCGCGTGGCTGATATTAGAGAGTCGAGCAATGACCCATTATCTCGATCTGTGAGACACCGTTTAAGGAGAGACTATGGTATTGAAGGTGGCGTACCTGTAGTTTTCTCTTTGGAGAAACCCAAGGCAAAGCTTCTTCCCTTTAAGGGACCTAGTGGAGATGATGAAAATCCATCTGATTATCAAATAGTGCCGGGGTTTAGAGTTCGCATAATTCCTGTTCTAGGAACCATACCTGCTATTTTTGGACAAGTCATGGCATCCTATGTTGTGACGCAACTGGCCGGGTTTCAAGTTCAAATGGAGCCAGTTGTAAATTTTGATATGGATCACTATCGAATGCTCCATCAGCGCCTCATTGAGCATGAAGAGTTGATGTATGGAACATCCATGGAAGTTCAGGTAGATGTTGAAGAAGTGATGTATATTGCAAAGGAGTTGTGGCATGGACGAAGTGCAAGAGATCAATCTATAAAAGATGTAGGACGCGGAATGTGGCGTTCGGCGAATGAGTTAATACTTGTGAGATGGGATCGAGCAAAGCCAGCATCAGCTTCAAATCTTATTCTTCTAAAATTCAAAGAGGCTGATGAGCATGAGACGAGGACACTTGAAGATATAAAGGAAGAAGAACCTGCATTTTTTGCTAGGATTACATCTGTGCTGAAGCGGGCTGAATTAGAATTCTCTTTATAAGCAATCGTGGATAGTATAGATTCAGATTTTTATGCGTATTGCTCAAGCTACATTCTTTTTCTCATTTCAATTTATGTGCGTGATTCGCTTGTTAAGGTTTGTGAGAAAATTGAGGTAGCTTGTTTGAGGTAACATTAAGACGTGCTAAATCACTTTGAATGATCAAAAGAATGAGAATGCAGAGAAGGCAACTAATCGCGCATATGTAGAAATAATCATCTAAATCTACAAATAGATGTTTTGTTAATTTGAATATTGTAATGGAATATTTGTTTAGGGAAAAATCTAGGATCAGCTTACTAATATCATAATTATAGAGCCCGATACCTGTTTGGTT

Network for GWHGAAZE007748

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	81	339	2.90E-40

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.319
	SRR3591706	second leaf	2.151
	SRR3591707	mature leaf	2.479
	SRR3591708	Shoot apex	7.675
	SRR3591709	Stem	4.352
	SRR3591710	White floral bud	3.444
	SRR3591711	White flower	6.904
	SRR3591712	Green floral bud	5.489
	SRR3591713	Yellow flower	3.406
SRP173429	SRR8316895	Juvenile bud stage	5.755
	SRR8316896	Juvenile bud stage	8.511
	SRR8316897	Juvenile bud stage	3.643
	SRR8316894	Third green stage	2.231
	SRR8316900	Third green stage	7.274
	SRR8316901	Third green stage	6.660
	SRR8316898	Complete white stage	1.516
	SRR8316899	Complete white stage	8.114
	SRR8316903	Complete white stage	2.094
	SRR8316902	Silver flowering stage	0.775
	SRR8316904	Silver flowering stage	1.519
	SRR8316905	Silver flowering stage	0.820
	SRR8316906	Gold flowering stage	3.381
	SRR8316907	Gold flowering stage	2.472
	SRR8316908	Gold flowering stage	4.157
SRP132670	SRR6706286	Control	6.081
	SRR6706287	Light intensity 50%	6.751
	SRR6706288	Light intensity 20%	7.220
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.106
	CNS0095593	Slightly white alabastrum(diploid) 2	8.611
	CNS0095594	Slightly white alabastrum(diploid) 3	8.915
	CNS0095595	Whole white alabastrum(diploid) 2	5.445
	CNS0095596	Whole white alabastrum(diploid) 3	7.209
	CNS0095597	Whole white alabastrum(diploid) 4	5.336
	CNS0095598	Silvery flower (diploied) 1	5.164
	CNS0095599	Silvery flower (diploied) 2	4.156
	CNS0095600	Silvery flower (diploied) 3	3.087
	CNS0095601	Golden flower (diploid) 1	4.213
	CNS0095602	Golden flower (diploid) 2	3.644
	CNS0095603	Golden flower (diploid) 3	3.892
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.678
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.269
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.890
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.468
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.762
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.984
	CNS0095610	Silvery flower (tetraploid) 1	3.908
	CNS0095611	Silvery flower (tetraploid) 2	4.309
	CNS0095612	Silvery flower (tetraploid) 3	3.442
	CNS0095613	Golden flower (tetraploid) 1	2.281
	CNS0095614	Golden flower (tetraploid) 2	4.966
	CNS0095615	Golden flower (tetraploid) 3	1.394
CRA001975	CRR073297	Stem 1	6.107
	CRR073298	Stem 2	7.637
	CRR073299	Stem 3	4.177
	CRR073300	Leaf 1	5.386
	CRR073301	Leaf 2	3.970
	CRR073302	Leaf 3	5.439
	CRR073303	Juvenile bud 1	4.969
	CRR073304	Juvenile bud 2	3.237
	CRR073305	Juvenile bud 3	3.309
	CRR073306	Third green 1	0.370
	CRR073307	Third green 2	0.133
	CRR073308	Third green 3	0.483
	CRR073309	Second white 1	1.003
	CRR073310	Second white 2	1.538
	CRR073311	Second white 3	0.339
	CRR073312	Silver flowering 1	0.235
	CRR073313	Silver flowering 2	0.183
	CRR073314	Silver flowering 3	0.525
	CRR073315	Gold flowering 1	3.677
	CRR073316	Gold flowering 2	7.727
	CRR073317	Gold flowering 3	2.467
	CRR073318	Tawny withering 1	5.868
	CRR073319	Tawny withering 2	3.402
	CRR073320	Tawny withering 3	3.932