Gene detail

Detail information of GWHGAAZE007759

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010271343.1	PREDICTED: condensin complex subunit 3 [Nelumbo nucifera]
trEMBL	tr\|B9H3B9\|B9H3B9_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEE86395.2}
TAIR10	AT5G37630.1	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	52009452	52023482	+
GWHAAZE00000002	mRNA	52009452	52023482	+
GWHAAZE00000002	exon	52009452	52009820	+
GWHAAZE00000002	exon	52010995	52011198	+
GWHAAZE00000002	exon	52011829	52011974	+
GWHAAZE00000002	exon	52013211	52013479	+
GWHAAZE00000002	exon	52014928	52015016	+
GWHAAZE00000002	exon	52016275	52016422	+
GWHAAZE00000002	exon	52017953	52018392	+
GWHAAZE00000002	exon	52019951	52020465	+
GWHAAZE00000002	exon	52020844	52020892	+
GWHAAZE00000002	exon	52020997	52021281	+
GWHAAZE00000002	exon	52022010	52022271	+
GWHAAZE00000002	exon	52023142	52023482	+
GWHAAZE00000002	CDS	52009452	52009820	+
GWHAAZE00000002	CDS	52010995	52011198	+
GWHAAZE00000002	CDS	52011829	52011974	+
GWHAAZE00000002	CDS	52013211	52013479	+
GWHAAZE00000002	CDS	52014928	52015016	+
GWHAAZE00000002	CDS	52016275	52016422	+
GWHAAZE00000002	CDS	52017953	52018392	+
GWHAAZE00000002	CDS	52019951	52020465	+
GWHAAZE00000002	CDS	52020844	52020892	+
GWHAAZE00000002	CDS	52020997	52021281	+
GWHAAZE00000002	CDS	52022010	52022271	+
GWHAAZE00000002	CDS	52023142	52023482	+

Transcript Sequence
>GWHTAAZE007767 ATGTCAATCGACGTCGAAGAAGAGAAGAAATTGATGCAAAAGATATCTAGGGTTTTGGACGAAGCGCGTGCATCATATGCCACTCACATCAGAAAGCTAAAGGACCTATCCACCGTCCGGTCTTCTTCGTCGACTACCTCGTTCTTCGGTGCATTTTCCAAAACGCTAACTCCGCTCTTCAAGTTCCAGCGCCGAACTGCTTCCGCTGAACGAATTGTGCGATTTGTGGCGAATTTTGCTAGCGTTCGGGATGGGAACAATGTTGCCGATTGCGATGCATTTCTTGAAGAGTTTTTACGGTTTCTCATTATTGCTGCTAGTGCTTCTAATAAAACAGCGAGGTTTAGGGCTTGTCAGATTATTTCTGAGATCATAATGCGATTGCCAGACGACACAGAAGTGAGCAGTGAACTGTGGGATGAAGTGATAGACTGCATGAAGTTGCGGGTGGGCGATAAAGTTCCAGTAATCCGTACATTTGCAGTCAGGGGTGTGTCTCGTTTTGCAAGTGATTTAGAGAACAGTGACGTTCTAAAATTACTCCTTCAAACATTATCGCTTGAGCAAAACCCTGATGTTCGTAAGACTATTATATTATCATTGCCTCCAACAAACGCAACTTCAGCAGCAATTATCGATTGCACGCTGGACGTGAGCGAGTCAGTACGCAAAGCAGCTTATTGTGTTCTGGCCAGTAAATTTCCTCTTCAGAGCCTCAGCATAAAGCTGAGGACCACTATTCTTCAGAGAGGACTTGCTGATCGTTCTGCAGCTGTAACAAAGGAATGTCTTAAATTGATGAAAGATGAGTGGCTTGTGAAGTCTTGCAATGGAGATCCCATTCAGCTTCTCAAGTATCTTGATGTTGAAACTTATGAATCGGTTGGGGAGTCTGTTATGGGGGCTCTTCTTAAAGCTGGATTGGTAAAAGTGCAAGATGGTCAAAGTATTAAGCAATTTTTATTATCAACTATCGACACAACTGAAGGGAACTGCCCCCCAAGCATCCAACTTATGGAAGCAGAGGTTGCACTTTACTGGAGAACTGTATGTAAGCACTTGCAGATAGAAGCACAAGCAAAGGGTTCTGATGCTGCTACAACAATGGGCACAGAAGCTGCTGTATATGCATCAGAAGCTTCAGACAACAATGAACTTCTTGAGAGAATTCTCCCCGCTGCTGTTTCTGACTACATTGAGTTGGTTAAAGCTCATATTCTTTCTGGACCAAATTATCGCTTTACATCTCGGCAGCTGCTGTTGCTTGGGGCAATGCTCGACTTCTCTGACTCTACAAACAGGAGGGTTGCTGGTGCATTTGTGCAGGAGTTACTGCACAGACCTCTTGATTATGAATTGGTTGACGAGAAAACAAAGGTTGTAATAGGAGATGGAATTAATCTTGGTGGAGATAGAGAGTGGGCTGATGCAGTGTCCGAATTGGCGAAAAGGGTGCACGCTGCTTCGGGAGAATTTGAAGAGGTTGTTTTAGGGGTTGTGGAGGAGCTTGCTCGGCCTTGTAGAGAGAGAACAGCAGACTTTATGCAGTGGATGCACTGCCTTTCTGTTACTGGCCTCCTCTTGGAAAACACCAAGTCGTTCCGTTGGATGCACGGGAAGTCCATTGAACCTGCTGAACTACTACGGTCCTTATTGCTTCCCGGGGCCAAGCATGTGCACTTGGATGTTCAGAGGGCTGCTATCAGATGCCTTGGGCTTTTTGGATTGTTAGAGAGGAATCCGAGTGAGGAAATAATAAAACAATTACGACTTTCCTTTGTGAACGGACACTCTACAATCAGTATTATGGCTGCCAAGGCATTAATTGATCTTCTAATGTGGCATGGGCCCAATGAAGTCGACAAAACAGTCAACCAAAATCTCTCATCAGAACTTCTAGATCCTCCAATTGTTGTTGATCCTGTCAATTTGTCCAATACAAATGAGAATTTTGATATTAAACTGCTTGATGTGTTATATGCTGGGCTAGAGAGACAAGAATGGTTGAAATCGGGTGAGGCTGATGAGAATGAGTCGGTTCAATCTGTTATTGGGGAGGGACTTGCAAAGATTCTCCTTTTGAGTGAGAAGTACCCGAGTATACCTACTTCATCACATCCTTTATTCTTTGCGAAGCTCATCAGCCTTTATTTTTGTAGCGAAAGTATGGAACTCCAGAGGTTGAAACAGTGCCTGTCTGTGTTCTTTGAACATTATCCATCCCTCTCAAAATGTATATCCAAGGCTTTCATTCCTGTTCTGCGTACAATGTGGCCTGGTATCAATGGAAATGCTTCGGGTTCTCCGGTAATGGTGTCTAACATGCGTAAGCGTGCTGTCCAAGCTTCGCGTTTTATGCTGCAGATGATACAGGCTCCTTTGTATATGAAGGATTCTCAACCGCTGGATGAAAGTGATAGCAAGAATTCAACAGAAACCCTAGATGATTCAGTTCATCCCTCCTGTGAGTTGGAGGGTGGAGAGGAAGGGGTTGCCATACGCATAGCTGTCGAGGCGGCTAGCTTCCATTCAAAGAAAACAGCGGCAGAAAAATCATATATATCTGCAATTTGTAGAATACTTGTAATGCTTAGCTTCCGTCCCTCAGAACAAGGTGCAATAAAGTTAATGAGGAAGCTTTTGAACCGAGTGGTTGAATCTGTATTGACTGAGAAGGAGCTTGTAAAGGAGCTGAAGTGGATGGCTGAACGTCTTAAGGCAATTGATGGACATCCAGATCAAGAATTGCCAAGGGATCAGGCTAATCTTGTGCTAGGGAGCTTGGGTTTAGAAACCAATATCAATGAATTTGAGTCCGTGGAAATCCCACCTACACCGGCACCACGCTCAACCAGGCCCACACGATCTAGGAGACGAGCAAGGCATGAAGAAGAATCTTCCTCAGAAGATGAAACTTCTCCCATTTCGGTCATGCCTACAAATGCTGGCATGATGAGCACACGTTCCCAGAGAGCAAGCAAAACCGCGGCATTGACCAAATTGACTGCCAAGAATAAGCCTGTCAAAATAGCGGATGGTCTTGAAGAGGACGACGAACAACTCTCGGATGTGACGTCTGATGATTATTCTGATGAATCGGATGTCACTCTTGAATGA

Network for GWHGAAZE007759

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12719.8	Cnd3	519	865	8.60E-57

Protein Sequence

>GWHPAAZE007763
MSIDVEEEKKLMQKISRVLDEARASYATHIRKLKDLSTVRSSSSTTSFFGAFSKTLTPLFKFQRRTASAERIVRFVANFASVRDGNNVADCDAFLEEFLRFLIIAASASNKTARFRACQIISEIIMRLPDDTEVSSELWDEVIDCMKLRVGDKVPVIRTFAVRGVSRFASDLENSDVLKLLLQTLSLEQNPDVRKTIILSLPPTNATSAAIIDCTLDVSESVRKAAYCVLASKFPLQSLSIKLRTTILQRGLADRSAAVTKECLKLMKDEWLVKSCNGDPIQLLKYLDVETYESVGESVMGALLKAGLVKVQDGQSIKQFLLSTIDTTEGNCPPSIQLMEAEVALYWRTVCKHLQIEAQAKGSDAATTMGTEAAVYASEASDNNELLERILPAAVSDYIELVKAHILSGPNYRFTSRQLLLLGAMLDFSDSTNRRVAGAFVQELLHRPLDYELVDEKTKVVIGDGINLGGDREWADAVSELAKRVHAASGEFEEVVLGVVEELARPCRERTADFMQWMHCLSVTGLLLENTKSFRWMHGKSIEPAELLRSLLLPGAKHVHLDVQRAAIRCLGLFGLLERNPSEEIIKQLRLSFVNGHSTISIMAAKALIDLLMWHGPNEVDKTVNQNLSSELLDPPIVVDPVNLSNTNENFDIKLLDVLYAGLERQEWLKSGEADENESVQSVIGEGLAKILLLSEKYPSIPTSSHPLFFAKLISLYFCSESMELQRLKQCLSVFFEHYPSLSKCISKAFIPVLRTMWPGINGNASGSPVMVSNMRKRAVQASRFMLQMIQAPLYMKDSQPLDESDSKNSTETLDDSVHPSCELEGGEEGVAIRIAVEAASFHSKKTAAEKSYISAICRILVMLSFRPSEQGAIKLMRKLLNRVVESVLTEKELVKELKWMAERLKAIDGHPDQELPRDQANLVLGSLGLETNINEFESVEIPPTPAPRSTRPTRSRRRARHEEESSSEDETSPISVMPTNAGMMSTRSQRASKTAALTKLTAKNKPVKIADGLEEDDEQLSDVTSDDYSDESDVTLE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06678	YCG1, CAPG	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.082
	SRR3591706	second leaf	1.657
	SRR3591707	mature leaf	0.478
	SRR3591708	Shoot apex	18.700
	SRR3591709	Stem	3.943
	SRR3591710	White floral bud	0.989
	SRR3591711	White flower	1.292
	SRR3591712	Green floral bud	1.218
	SRR3591713	Yellow flower	1.187
SRP173429	SRR8316895	Juvenile bud stage	3.497
	SRR8316896	Juvenile bud stage	2.793
	SRR8316897	Juvenile bud stage	1.170
	SRR8316894	Third green stage	1.169
	SRR8316900	Third green stage	1.908
	SRR8316901	Third green stage	1.291
	SRR8316898	Complete white stage	0.736
	SRR8316899	Complete white stage	0.996
	SRR8316903	Complete white stage	0.562
	SRR8316902	Silver flowering stage	1.552
	SRR8316904	Silver flowering stage	2.316
	SRR8316905	Silver flowering stage	0.418
	SRR8316906	Gold flowering stage	3.070
	SRR8316907	Gold flowering stage	2.743
	SRR8316908	Gold flowering stage	5.154
SRP132670	SRR6706286	Control	1.337
	SRR6706287	Light intensity 50%	1.413
	SRR6706288	Light intensity 20%	1.532
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.363
	CNS0095593	Slightly white alabastrum(diploid) 2	1.596
	CNS0095594	Slightly white alabastrum(diploid) 3	1.635
	CNS0095595	Whole white alabastrum(diploid) 2	1.194
	CNS0095596	Whole white alabastrum(diploid) 3	1.306
	CNS0095597	Whole white alabastrum(diploid) 4	0.948
	CNS0095598	Silvery flower (diploied) 1	2.793
	CNS0095599	Silvery flower (diploied) 2	2.983
	CNS0095600	Silvery flower (diploied) 3	5.695
	CNS0095601	Golden flower (diploid) 1	3.504
	CNS0095602	Golden flower (diploid) 2	8.250
	CNS0095603	Golden flower (diploid) 3	7.239
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.791
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.694
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.705
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.567
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.448
	CNS0095610	Silvery flower (tetraploid) 1	8.455
	CNS0095611	Silvery flower (tetraploid) 2	9.018
	CNS0095612	Silvery flower (tetraploid) 3	16.020
	CNS0095613	Golden flower (tetraploid) 1	29.148
	CNS0095614	Golden flower (tetraploid) 2	15.718
	CNS0095615	Golden flower (tetraploid) 3	40.512
CRA001975	CRR073297	Stem 1	4.324
	CRR073298	Stem 2	4.480
	CRR073299	Stem 3	5.692
	CRR073300	Leaf 1	1.664
	CRR073301	Leaf 2	1.987
	CRR073302	Leaf 3	1.826
	CRR073303	Juvenile bud 1	1.510
	CRR073304	Juvenile bud 2	1.087
	CRR073305	Juvenile bud 3	1.569
	CRR073306	Third green 1	0.927
	CRR073307	Third green 2	1.218
	CRR073308	Third green 3	1.624
	CRR073309	Second white 1	3.672
	CRR073310	Second white 2	2.798
	CRR073311	Second white 3	4.845
	CRR073312	Silver flowering 1	5.619
	CRR073313	Silver flowering 2	5.627
	CRR073314	Silver flowering 3	3.791
	CRR073315	Gold flowering 1	0.610
	CRR073316	Gold flowering 2	1.353
	CRR073317	Gold flowering 3	0.998
	CRR073318	Tawny withering 1	5.419
	CRR073319	Tawny withering 2	3.416
	CRR073320	Tawny withering 3	6.224