Gene detail

Detail information of GWHGAAZE007772

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAK85402.2	0	beta-1,3-glucanase [Camellia sinensis]
Swissprot	tr\|Q9C7U5\|E132_ARATH	0	Glucan endo-1,3-beta-glucosidase 2 (Precursor)
trEMBL	tr\|Q94EN5\|Q94EN5_CAMSI	0	Beta-1,3-glucanase {ECO:0000313\|EMBL:AAK85402.2}
TAIR10	AT1G66250.1	3E-177	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	52275567	52280230	+
GWHAAZE00000002	mRNA	52275567	52280230	+
GWHAAZE00000002	exon	52275567	52275773	+
GWHAAZE00000002	exon	52276562	52276625	+
GWHAAZE00000002	exon	52277756	52278978	+
GWHAAZE00000002	exon	52279118	52279148	+
GWHAAZE00000002	exon	52279996	52280113	+
GWHAAZE00000002	exon	52280210	52280230	+
GWHAAZE00000002	five_prime_UTR	52275567	52275773	+
GWHAAZE00000002	five_prime_UTR	52276562	52276625	+
GWHAAZE00000002	five_prime_UTR	52277756	52277876	+
GWHAAZE00000002	CDS	52277877	52278978	+
GWHAAZE00000002	CDS	52279118	52279148	+
GWHAAZE00000002	CDS	52279996	52280113	+
GWHAAZE00000002	CDS	52280210	52280230	+

Transcript Sequence
>GWHTAAZE007780 TTATATACCCTTTTCTTTACCATTCCCTCATTCTCTTATTCTTCTTCTTCTTCAAAAATTAATTATTTCACTGCCTCATTTTCATTAATTCTTCTCTATAGATTTTGGCATCAAAATTTCTTTTATTGAGGGAGTTGTTTTCAATGGAATTTCTTGTTTTTCTTCTTCTTATTTTAGGAGTATCTGCTGTCTCTGCTTCTAATGAAGGAACTGATGTTATGCTCATCAAAAAAGTACAAATTTCTAAAGCACTGCCACCTCACTTGATATGATCCATTCATTGGTGTGAATATAGGCACAGACCTCTCAGACATGCCACACCCAACCCAAGTAGTAGCCCTCCTCAAAGCCCAACAGATCCGCCACATCCGCCTGTACACGCGGACCGAGCCATGCTCTTAGCCTTAGCCAACACCGGCATTCTGGTCACCATCACGGTCCCCAATGACCAACTCCTTGGTGTTGGCCAATCAAACTCCACCGCCGCCAATTGGGTGTCCCAAAACATCGTGGCCCACTACCCTGCAACCAACATAACCACTGTTTGTGTCGGCTCTGAGGTCCTAAATACCCTTCCCAATGCTGCTCCGGTACTTATAAACGCCCTCAAATTCGTCCACTCAGCCCTAGTTGCCTCAAATCTTGACCGCCAAATCAAAGTCACTACTCCCCTTTCATCCACCATTATTTTGGACTCTTTCCCCCCATCGCAAGCATTTTTCAACCATTCTTTAAATCCCATTTTAGTACCTATGTTGTACTTTTTACAATCAACGGGCTCATTTCTGACTCTTAATATATACCCTTACTACGACTATATGCAGTCGAATGGCGTCATTCCTTTGGATTACGCGCTTTTTAAGCCCTTACCGGCAAACAAAGAAGCCGTGGATTCTAACACACTTCTCCACTATTCGAACGTGTTTGATGCAATGGTTGATGCGGCTTACTTCGCTATGGCTTTCCTTAACTTCACTAACGTACCTGTGGTGGTGACCGAGTCAGGCTGGCCTTCAAAAGGAGACTCGAACGAGCCCGATGCAACTCTAGACAATGCTAACACTTACAATAGCAACTTGATAAGGCATGTTTTGAACAAAACTGGGACCCCCAAACACCCGGGGATTGCGGTTAGTACTTACATTTACGAGCTTTATAATGAGGACCTGAAGGCTGGGCCCGTTTCGGAGAAGAACTGGGGATTGTTTGATGCCAATGGGGCGCCTATTTATACATTGAGATTGACAGGGTCGGGTTCGGTTTTGGCAAATGATACTTCAAACCGGACTTTTTGTACGGCTAGGGATGGGGCGGACCCGAAAATGCTGCAGGCGGCTTTGGATTGGGCTTGTGGGCCCGGGAAGGTGGATTGTTCAGCCATGTTGCAGGGTGGTCCATGCTATGACCCGGATAACGTGGCTGCACATGCGACTTATGCTTTTGATGCTTATTATCAGCTCATGGGGAGGGCTCCTGGGACTTGTGACTTCAATGGTCATGGTTCTTGCGTGTTTCTTGGAAGGGGTGTTGACAAGAATTTAACTTCCCTAAATGGTACAGCCGTGCCCACGAACTTGACGAGCTCAGCAGCCTGGCCTCTTAGTGGCTACAGATATGGCGGCAGTGTCTTTGCAAGCGCCGCGACCTCCGTTGGAGAATTTTGA

Network for GWHGAAZE007772

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	2	282	1.10E-66
PF07983.14	X8	300	370	1.20E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19891	GN1_2_3	Metabolic pathways	map01100
K19891	GN1_2_3	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.713
	SRR3591706	second leaf	5.944
	SRR3591707	mature leaf	0.416
	SRR3591708	Shoot apex	29.062
	SRR3591709	Stem	8.313
	SRR3591710	White floral bud	1.720
	SRR3591711	White flower	2.279
	SRR3591712	Green floral bud	5.336
	SRR3591713	Yellow flower	0.071
SRP173429	SRR8316895	Juvenile bud stage	8.912
	SRR8316896	Juvenile bud stage	7.342
	SRR8316897	Juvenile bud stage	3.453
	SRR8316894	Third green stage	2.912
	SRR8316900	Third green stage	5.671
	SRR8316901	Third green stage	5.808
	SRR8316898	Complete white stage	0.035
	SRR8316899	Complete white stage	3.498
	SRR8316903	Complete white stage	0.680
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.024
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.015
SRP132670	SRR6706286	Control	6.427
	SRR6706287	Light intensity 50%	6.171
	SRR6706288	Light intensity 20%	6.890
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.700
	CNS0095593	Slightly white alabastrum(diploid) 2	6.672
	CNS0095594	Slightly white alabastrum(diploid) 3	5.028
	CNS0095595	Whole white alabastrum(diploid) 2	3.748
	CNS0095596	Whole white alabastrum(diploid) 3	1.841
	CNS0095597	Whole white alabastrum(diploid) 4	1.972
	CNS0095598	Silvery flower (diploied) 1	7.250
	CNS0095599	Silvery flower (diploied) 2	5.023
	CNS0095600	Silvery flower (diploied) 3	1.576
	CNS0095601	Golden flower (diploid) 1	3.534
	CNS0095602	Golden flower (diploid) 2	1.969
	CNS0095603	Golden flower (diploid) 3	1.913
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.704
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.258
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.609
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.596
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.157
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.526
	CNS0095610	Silvery flower (tetraploid) 1	0.222
	CNS0095611	Silvery flower (tetraploid) 2	1.289
	CNS0095612	Silvery flower (tetraploid) 3	0.436
	CNS0095613	Golden flower (tetraploid) 1	0.003
	CNS0095614	Golden flower (tetraploid) 2	0.099
	CNS0095615	Golden flower (tetraploid) 3	0.055
CRA001975	CRR073297	Stem 1	15.616
	CRR073298	Stem 2	14.981
	CRR073299	Stem 3	18.579
	CRR073300	Leaf 1	10.774
	CRR073301	Leaf 2	9.670
	CRR073302	Leaf 3	9.474
	CRR073303	Juvenile bud 1	4.471
	CRR073304	Juvenile bud 2	1.772
	CRR073305	Juvenile bud 3	8.408
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.183
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.107
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.005
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.017
	CRR073315	Gold flowering 1	0.785
	CRR073316	Gold flowering 2	1.109
	CRR073317	Gold flowering 3	1.447
	CRR073318	Tawny withering 1	5.999
	CRR073319	Tawny withering 2	3.162
	CRR073320	Tawny withering 3	6.170