Gene detail

Detail information of GWHGAAZE007789

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002266379.2	PREDICTED: uncharacterized protein LOC100254417 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q0WM29\|MMSA_ARATH	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (Precursor)
trEMBL	tr\|F6I723\|F6I723_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62741.1}
TAIR10	AT2G14170.1	aldehyde dehydrogenase 6B2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	52658091	52672063	+
GWHAAZE00000002	mRNA	52658091	52672063	+
GWHAAZE00000002	exon	52658091	52658160	+
GWHAAZE00000002	exon	52659808	52659887	+
GWHAAZE00000002	exon	52660042	52660116	+
GWHAAZE00000002	exon	52660216	52660377	+
GWHAAZE00000002	exon	52660464	52660542	+
GWHAAZE00000002	exon	52661012	52661166	+
GWHAAZE00000002	exon	52661549	52661612	+
GWHAAZE00000002	exon	52663042	52663121	+
GWHAAZE00000002	exon	52663327	52663392	+
GWHAAZE00000002	exon	52664160	52664210	+
GWHAAZE00000002	exon	52664319	52664470	+
GWHAAZE00000002	exon	52665312	52665402	+
GWHAAZE00000002	exon	52665925	52666005	+
GWHAAZE00000002	exon	52668425	52668502	+
GWHAAZE00000002	exon	52668586	52668621	+
GWHAAZE00000002	exon	52668731	52668774	+
GWHAAZE00000002	exon	52669990	52670068	+
GWHAAZE00000002	exon	52670160	52670298	+
GWHAAZE00000002	exon	52670865	52672063	+
GWHAAZE00000002	CDS	52658091	52658160	+
GWHAAZE00000002	CDS	52659808	52659887	+
GWHAAZE00000002	CDS	52660042	52660116	+
GWHAAZE00000002	CDS	52660216	52660377	+
GWHAAZE00000002	CDS	52660464	52660542	+
GWHAAZE00000002	CDS	52661012	52661166	+
GWHAAZE00000002	CDS	52661549	52661612	+
GWHAAZE00000002	CDS	52663042	52663121	+
GWHAAZE00000002	CDS	52663327	52663392	+
GWHAAZE00000002	CDS	52664160	52664210	+
GWHAAZE00000002	CDS	52664319	52664470	+
GWHAAZE00000002	CDS	52665312	52665402	+
GWHAAZE00000002	CDS	52665925	52666005	+
GWHAAZE00000002	CDS	52668425	52668502	+
GWHAAZE00000002	CDS	52668586	52668621	+
GWHAAZE00000002	CDS	52668731	52668774	+
GWHAAZE00000002	CDS	52669990	52670068	+
GWHAAZE00000002	CDS	52670160	52670298	+
GWHAAZE00000002	CDS	52670865	52672063	+

Transcript Sequence
>GWHTAAZE007797 GTTCTGTTAAGTAGGTGTGGGTCTGTAAAGTTTCCTACCTTTACTCTGCCTGAATTTCCTCTCTTCCTAAATAAAAGTTCTAAAGCATGGAGACCTAATATATCCTCTCCAGTGACTTCCTCAGAGGCATCCACAAAGCACAACTGTCCCGTGAAGGTTCCTAATCTTATTGGAGGGAAATTTGTGGAGTCACAAGCGAGTGCAATCATTGATGTTGTAAATCCTGCAACACAGAAGGTTGTTTCTCAAGTGCCTTTGACTTCCTCTGAAGAGTTCAAAGCTGCAGTGAGTGCAGCTAATCAGGCTTTTCCTTCGTGGAAAAACACGCCTGTTACTACTCGTCAGCGCATCATGTTCAAGCTACAAGAGCTTATACGTAGGGACATTGACAAGCTTGCCATGAACATTGCTATAGAGCAGGGCAAGACATTGAGTGGGGCTAGAGGTGATGTGCTTCGTGGTTTAGAGGTGGTCGAACATGCTTGTGGAATGGCAACTCTGCAGATGGGGCAGTTTGTCCCTAATGCATCTAATGGCATTGATACATATTGCATCAGAGAACCGCTTGGTGTTTGTGCAGGGATATGTCCCCTAAACTTTCCTGCAATGATTTCTTTGTGGATGTTTCCTATAGCAGTTACATGTGGTAATACATTTATTCTGAAGCCATCTGAGAAAAATCCAGGGGCTTCGATGATACTTGCCGAATTGGCAATAGAAGCTGGTTTACCTGCTGGCGTCCTAAATATTGTTCACGGAACCCATGATATTGTCAATCATATTTGCGATGATGATGATATTAAAGCTATATCGTTAATAGGCTCCAATACTGCCGGAATGCATATCTATGCTAGGGCAGCTGCAAGAGGCAAACGCGTTCAGTCTAATATGGGAGCCAAAAACCATGCAATAATCATGCCTGATGCAAGCGTGGATACCACTTTGAATTCTTTGGTTGCTGCTGGTTTTGGTGCTGCGGGACAGAGGTGCATGACTCTCAGTACAGCTGTTTTCGTTGGAGGCTCAAGACCATGGGAAGAAGAGCTTGTGGAGCGTGCCAAAGCACTTAAAGTAAATTCAGGAACTGAGCCAGGCGCAGACCTTGGACCAGTCATTAGTAAAGAGGCAAAGGACCGGATATGCAGATTAGTTCAAAATGCTGTCGAAAGTGGTGCCAGACTTGTTCTTGATGGGAGGAACATTGTGGTCCCAAGATATGAGCATGGGAACTTTGTGGGACCAACTATCTTATGTGATGTTACAACCGGCATGGAATGCTATAAGGAAGAAATGTTTGGACCAGTTCTTCTCTGTATTAAGGTAGACAGCCTAGACGAGGCCATAGCAATTGTCAATAGACACAAGTATGGAAATGGAGCTACCATTTTTACTACATCTGGTGTTGCTGCTCGGAAGTTCCAAAACGATGTTGAGGCTGGTCTGGTTGGGATTAATGTTCCTGTTCCAATTCCTTTGCCATTTTCCTCATTCAATGGATCCAAGTCATCCTTTGCTGGCGATCTCAACTTCTGCGGTATCTCTCTCTCTCTCTCTCTATTACACATACATAAACATTGGGTTCCGAAGGCTGGTGTTCAATTTTACACACAGATAAAAACAGTTGCACAACAATGGGAAGACTTGCCAAGAAGATTATCATTACCTCAACCTCTCCCTCCAACATCCGAGACGGAAACTAGTCGAGGAGTATCTCTATCTCAGCCTCTAACATCCGAAAGTGATTTGCCTAGTCGAGAAGTATCACCGGCCATGCCTTCTACTTCAGAGACGGATTTGCAAAACCCGAAAGTCATGCAGTCTATAGAAATAGACGAAGAGAGAAACTCAATGAGTGAAAGTGACCGAAACTCCGAGAGGATGTACATACCTCAAGCATCCAAGTGGGATGAAACTCGTTTCTCGTTTTCTGAGAAAACTTGCATGCCTCCAACTTCTCACCGGATTGAAAACACGACCCCGACACCTCAAATGATGGACATTACCACGGGTCCCACTCCTGAGAGGTTATCAGTCCCAACCTCTCAAGACAGTGTCTGTCATGTGGGTCCCACTCCTGAGAGATTATTGGTCCCACCATCTCTCCAAAATGACAATGCAGGTCCAGCTTTCGGGAGGTTATCAGTCCCACCCTCTCACCGGAATGACGGTGTGGGTCCTACCCCTGATAGATTATTGGTCCCTTCCGTTAACCGGAACGACAGTGTGGGGCCCACTCCCAAGAAGTTATCGGTACATCGGAACGAAAATGTGGGTATCGTTTCTCTGATGAATGAGAATATGGGAGCAACGTCTAGAAGGGCGGATATCAACTTACGTCCAAGTTCCGAGAGGGTATACATGCCTACAGTATCTAATCAGACGAAAGACAGTGTGGGCCCCCCTCAAATGCAGGACCCTAGCATGCATTCGAATCCTGAGACATTATACATTTTGGCGTCTCAGAGGAGTGACAGTATTGGTCTACTGCCGTTAAGGATGGAGAGTAGTAGTACAATGGGTGGACCAGGTCCTGAGAGGATGTATATGACCCCATTATCGTACCGGAGTGAAGTGGGTAGGTCGGCAACTATTGAGATGTATATGTCATCTTCCTCGTCTTCAGCAAATTTTGAGAGGAGCAAGGGTGTGGCGTTGACACCGGAGAGGCTATGTATGCCTGCAAATCCTCAAAGGATGTATGCACAAACGCCAATAATATCAATGGGGGAGTATTCGGGTCAAGGGGTTATGCCGAATTTGCCGACATCTCAGAGTTTGTAG

Network for GWHGAAZE007789

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	61	507	3.50E-130

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00140	mmsA, iolA, ALDH6A1	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Inositol phosphate metabolism	map00562
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0004491	molecular_function	methylmalonate-semialdehyde dehydrogenase (acylating) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.287
	SRR3591706	second leaf	12.238
	SRR3591707	mature leaf	19.882
	SRR3591708	Shoot apex	17.341
	SRR3591709	Stem	17.252
	SRR3591710	White floral bud	17.306
	SRR3591711	White flower	12.172
	SRR3591712	Green floral bud	23.733
	SRR3591713	Yellow flower	8.171
SRP173429	SRR8316895	Juvenile bud stage	12.262
	SRR8316896	Juvenile bud stage	18.517
	SRR8316897	Juvenile bud stage	12.723
	SRR8316894	Third green stage	6.806
	SRR8316900	Third green stage	17.145
	SRR8316901	Third green stage	14.681
	SRR8316898	Complete white stage	4.226
	SRR8316899	Complete white stage	22.545
	SRR8316903	Complete white stage	6.886
	SRR8316902	Silver flowering stage	2.470
	SRR8316904	Silver flowering stage	3.598
	SRR8316905	Silver flowering stage	1.796
	SRR8316906	Gold flowering stage	7.130
	SRR8316907	Gold flowering stage	5.223
	SRR8316908	Gold flowering stage	8.360
SRP132670	SRR6706286	Control	21.689
	SRR6706287	Light intensity 50%	20.266
	SRR6706288	Light intensity 20%	21.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.339
	CNS0095593	Slightly white alabastrum(diploid) 2	25.402
	CNS0095594	Slightly white alabastrum(diploid) 3	17.122
	CNS0095595	Whole white alabastrum(diploid) 2	17.924
	CNS0095596	Whole white alabastrum(diploid) 3	7.193
	CNS0095597	Whole white alabastrum(diploid) 4	12.919
	CNS0095598	Silvery flower (diploied) 1	13.150
	CNS0095599	Silvery flower (diploied) 2	16.159
	CNS0095600	Silvery flower (diploied) 3	9.665
	CNS0095601	Golden flower (diploid) 1	18.916
	CNS0095602	Golden flower (diploid) 2	16.088
	CNS0095603	Golden flower (diploid) 3	15.409
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.753
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.420
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.997
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.810
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.509
	CNS0095610	Silvery flower (tetraploid) 1	8.911
	CNS0095611	Silvery flower (tetraploid) 2	12.506
	CNS0095612	Silvery flower (tetraploid) 3	7.463
	CNS0095613	Golden flower (tetraploid) 1	3.860
	CNS0095614	Golden flower (tetraploid) 2	9.529
	CNS0095615	Golden flower (tetraploid) 3	4.355
CRA001975	CRR073297	Stem 1	20.582
	CRR073298	Stem 2	17.834
	CRR073299	Stem 3	16.524
	CRR073300	Leaf 1	25.414
	CRR073301	Leaf 2	19.896
	CRR073302	Leaf 3	16.013
	CRR073303	Juvenile bud 1	20.433
	CRR073304	Juvenile bud 2	11.322
	CRR073305	Juvenile bud 3	29.119
	CRR073306	Third green 1	3.431
	CRR073307	Third green 2	3.145
	CRR073308	Third green 3	3.141
	CRR073309	Second white 1	4.124
	CRR073310	Second white 2	4.389
	CRR073311	Second white 3	5.382
	CRR073312	Silver flowering 1	4.265
	CRR073313	Silver flowering 2	3.103
	CRR073314	Silver flowering 3	3.772
	CRR073315	Gold flowering 1	6.514
	CRR073316	Gold flowering 2	9.924
	CRR073317	Gold flowering 3	6.573
	CRR073318	Tawny withering 1	15.946
	CRR073319	Tawny withering 2	29.239
	CRR073320	Tawny withering 3	14.133