Detail information of GWHGAAZE007830


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010266641.15.49787E-72PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Nelumbo nucifera]
Swissprottr|Q8RXX9|ATL6_ARATH1E-40E3 ubiquitin-protein ligase ATL6 (Precursor)
trEMBLtr|A5BY68|A5BY68_VITVI1E-56Putative uncharacterized protein {ECO:0000313|EMBL:CAN83712.1}
TAIR10AT3G05200.12E-32RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5380841153809232-
GWHAAZE00000002mRNA5380841153809232-
GWHAAZE00000002exon5380841153809232-
GWHAAZE00000002CDS5380841153809232-
Transcript Sequence

Network for GWHGAAZE007830

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_27501.50E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.565
SRR3591706second leaf3.004
SRR3591707mature leaf2.620
SRR3591708Shoot apex3.219
SRR3591709Stem6.180
SRR3591710White floral bud6.375
SRR3591711White flower30.407
SRR3591712Green floral bud2.486
SRR3591713Yellow flower26.374
SRP173429 SRR8316895Juvenile bud stage 7.748
SRR8316896Juvenile bud stage 14.778
SRR8316897Juvenile bud stage 4.023
SRR8316894Third green stage 0.934
SRR8316900Third green stage 3.408
SRR8316901Third green stage 6.916
SRR8316898Complete white stage 0.776
SRR8316899Complete white stage 5.786
SRR8316903Complete white stage 1.821
SRR8316902Silver flowering stage3.166
SRR8316904Silver flowering stage3.417
SRR8316905Silver flowering stage1.983
SRR8316906Gold flowering stage 13.228
SRR8316907Gold flowering stage 12.416
SRR8316908Gold flowering stage 6.246
SRP132670SRR6706286Control2.640
SRR6706287Light intensity 50%2.473
SRR6706288Light intensity 20%2.537
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.198
CNS0095593Slightly white alabastrum(diploid) 21.815
CNS0095594Slightly white alabastrum(diploid) 33.635
CNS0095595Whole white alabastrum(diploid) 24.484
CNS0095596Whole white alabastrum(diploid) 31.900
CNS0095597Whole white alabastrum(diploid) 41.056
CNS0095598Silvery flower (diploied) 15.556
CNS0095599Silvery flower (diploied) 228.031
CNS0095600Silvery flower (diploied) 314.395
CNS0095601Golden flower (diploid) 130.126
CNS0095602Golden flower (diploid) 227.635
CNS0095603Golden flower (diploid) 327.562
CNS0095604Slightly white alabastrum(tetraploid) 12.621
CNS0095605Slightly white alabastrum(tetraploid) 21.844
CNS0095606Slightly white alabastrum(tetraploid) 33.621
CNS0095607Whole white alabastrum(tetraploid) 13.025
CNS0095608Whole white alabastrum(tetraploid) 22.052
CNS0095609Whole white alabastrum(tetraploid) 32.049
CNS0095610Silvery flower (tetraploid) 15.033
CNS0095611Silvery flower (tetraploid) 27.571
CNS0095612Silvery flower (tetraploid) 30.855
CNS0095613Golden flower (tetraploid) 17.339
CNS0095614Golden flower (tetraploid) 212.130
CNS0095615Golden flower (tetraploid) 34.132
CRA001975CRR073297Stem 13.326
CRR073298Stem 23.418
CRR073299Stem 33.086
CRR073300Leaf 13.214
CRR073301Leaf 26.982
CRR073302Leaf 36.221
CRR073303Juvenile bud 15.209
CRR073304Juvenile bud 22.575
CRR073305Juvenile bud 33.375
CRR073306Third green 10.561
CRR073307Third green 20.110
CRR073308Third green 30.351
CRR073309Second white 11.689
CRR073310Second white 21.885
CRR073311Second white 32.142
CRR073312Silver flowering 11.905
CRR073313Silver flowering 21.209
CRR073314Silver flowering 32.087
CRR073315Gold flowering 11.036
CRR073316Gold flowering 23.531
CRR073317Gold flowering 30.795
CRR073318Tawny withering 15.605
CRR073319Tawny withering 24.751
CRR073320Tawny withering 313.612