Gene detail

Detail information of GWHGAAZE007844

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006854035.1	5.6174E-125	hypothetical protein AMTR_s00048p00058600 [Amborella trichopoda]
Swissprot	tr\|Q9M3V8\|RS6_ASPOF	5E-122	40S ribosomal protein S6
trEMBL	tr\|U5D275\|U5D275_AMBTC	2E-125	40S ribosomal protein S6 {ECO:0000256\|PIRNR:PIRNR002129}
TAIR10	AT5G10360.1	1E-91	Ribosomal protein S6e

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	54093795	54096576	+
GWHAAZE00000002	mRNA	54093795	54096576	+
GWHAAZE00000002	exon	54093795	54093800	+
GWHAAZE00000002	exon	54094723	54094779	+
GWHAAZE00000002	exon	54094886	54094994	+
GWHAAZE00000002	exon	54095592	54095834	+
GWHAAZE00000002	exon	54096338	54096576	+
GWHAAZE00000002	CDS	54093795	54093800	+
GWHAAZE00000002	CDS	54094723	54094779	+
GWHAAZE00000002	CDS	54094886	54094994	+
GWHAAZE00000002	CDS	54095592	54095834	+
GWHAAZE00000002	CDS	54096338	54096576	+

Transcript Sequence
>GWHTAAZE007852 ATGAAGCCGGGCTTTTATGACAAGAGGATCTCCCAGGAAGTTAGTGGAGATGCACTTGGTGAGGAGTTCAAGGGGTATGTATTCAAAATTATGGGAGGCTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTGACTCCAGGCCGTGTTCGTCTTTTGCTTGTCCGAGGAGAAATGGAGAACGCCGAAGGAAGTCTGTTAGAGGATGTATTGTTAGCCAAGATCTCGGTTTTGAACTTGGTTATTGTGAAAAAGGGTGATAATGATCTGCCTGGATTGACTGATGTCGAGAAACCAAGGATGAGAGGTCCAAAGAGGGCGTCAAAGATCCGTAAACTCTTTAACCTTACCAAGGAAGATGATGTGAGGAAGTATGTCAACACTTATCGTCGAACCTTCACAACTAAATCTGGCAAGAAATGCAGCAAAGCCCCCAAGATACAGAGGCTGGTGACTCCGTTGACATTGCAGAGGAAGAGGGCTAGAATTGCTGAGAAGAAGCAGAGGATTGCAAAGGCCAAGTCCGAGGCAGCCGAGTACCAAAAGCTGCTTGCCAGCAGGTTGAAGGAGCAGAGAGAAAAGCGAAGCGAGAGCTTGGCTAAGAAGCGCTCCAGGCTCTCTGCCGCCTCCAAGCCCTCTATTGTTGCTTAA

Network for GWHGAAZE007844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01092.20	Ribosomal_S6e	5	96	4.30E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02991	RP-S6e, RPS6	Ribosome	map03010
		Apelin signaling pathway	map04371
		HIF-1 signaling pathway	map04066
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Insulin signaling pathway	map04910
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	466.235
	SRR3591706	second leaf	191.952
	SRR3591707	mature leaf	146.393
	SRR3591708	Shoot apex	547.113
	SRR3591709	Stem	265.983
	SRR3591710	White floral bud	195.232
	SRR3591711	White flower	213.833
	SRR3591712	Green floral bud	401.110
	SRR3591713	Yellow flower	134.838
SRP173429	SRR8316895	Juvenile bud stage	198.886
	SRR8316896	Juvenile bud stage	292.801
	SRR8316897	Juvenile bud stage	133.011
	SRR8316894	Third green stage	109.151
	SRR8316900	Third green stage	403.984
	SRR8316901	Third green stage	382.963
	SRR8316898	Complete white stage	83.848
	SRR8316899	Complete white stage	444.239
	SRR8316903	Complete white stage	113.505
	SRR8316902	Silver flowering stage	74.876
	SRR8316904	Silver flowering stage	79.582
	SRR8316905	Silver flowering stage	32.041
	SRR8316906	Gold flowering stage	102.523
	SRR8316907	Gold flowering stage	99.298
	SRR8316908	Gold flowering stage	129.575
SRP132670	SRR6706286	Control	368.719
	SRR6706287	Light intensity 50%	343.360
	SRR6706288	Light intensity 20%	386.475
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	441.703
	CNS0095593	Slightly white alabastrum(diploid) 2	579.900
	CNS0095594	Slightly white alabastrum(diploid) 3	432.306
	CNS0095595	Whole white alabastrum(diploid) 2	409.787
	CNS0095596	Whole white alabastrum(diploid) 3	506.185
	CNS0095597	Whole white alabastrum(diploid) 4	377.261
	CNS0095598	Silvery flower (diploied) 1	232.922
	CNS0095599	Silvery flower (diploied) 2	198.838
	CNS0095600	Silvery flower (diploied) 3	158.094
	CNS0095601	Golden flower (diploid) 1	197.986
	CNS0095602	Golden flower (diploid) 2	151.795
	CNS0095603	Golden flower (diploid) 3	148.378
	CNS0095604	Slightly white alabastrum(tetraploid) 1	479.010
	CNS0095605	Slightly white alabastrum(tetraploid) 2	480.689
	CNS0095606	Slightly white alabastrum(tetraploid) 3	555.656
	CNS0095607	Whole white alabastrum(tetraploid) 1	297.549
	CNS0095608	Whole white alabastrum(tetraploid) 2	323.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	485.963
	CNS0095610	Silvery flower (tetraploid) 1	162.710
	CNS0095611	Silvery flower (tetraploid) 2	153.486
	CNS0095612	Silvery flower (tetraploid) 3	98.190
	CNS0095613	Golden flower (tetraploid) 1	88.655
	CNS0095614	Golden flower (tetraploid) 2	114.457
	CNS0095615	Golden flower (tetraploid) 3	69.817
CRA001975	CRR073297	Stem 1	349.082
	CRR073298	Stem 2	374.660
	CRR073299	Stem 3	375.469
	CRR073300	Leaf 1	393.020
	CRR073301	Leaf 2	428.008
	CRR073302	Leaf 3	496.507
	CRR073303	Juvenile bud 1	444.584
	CRR073304	Juvenile bud 2	297.506
	CRR073305	Juvenile bud 3	404.914
	CRR073306	Third green 1	56.959
	CRR073307	Third green 2	71.615
	CRR073308	Third green 3	67.693
	CRR073309	Second white 1	77.037
	CRR073310	Second white 2	54.860
	CRR073311	Second white 3	40.764
	CRR073312	Silver flowering 1	51.926
	CRR073313	Silver flowering 2	74.860
	CRR073314	Silver flowering 3	52.358
	CRR073315	Gold flowering 1	168.381
	CRR073316	Gold flowering 2	176.590
	CRR073317	Gold flowering 3	172.417
	CRR073318	Tawny withering 1	401.170
	CRR073319	Tawny withering 2	333.624
	CRR073320	Tawny withering 3	402.009