Gene detail

Detail information of GWHGAAZE007849

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006366225.1	PREDICTED: ABC transporter G family member 11-like [Solanum tuberosum]
Swissprot	tr\|Q8RXN0\|AB11G_ARATH	ABC transporter G family member 11
trEMBL	tr\|D7TYZ7\|D7TYZ7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35723.3}
TAIR10	AT1G17840.1	white-brown complex homolog protein 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	54190780	54200089	+
GWHAAZE00000002	mRNA	54190780	54200089	+
GWHAAZE00000002	exon	54190780	54191215	+
GWHAAZE00000002	exon	54193873	54193952	+
GWHAAZE00000002	exon	54196498	54196962	+
GWHAAZE00000002	exon	54197765	54197851	+
GWHAAZE00000002	exon	54198221	54198346	+
GWHAAZE00000002	exon	54198494	54198688	+
GWHAAZE00000002	exon	54198802	54198888	+
GWHAAZE00000002	exon	54199424	54200089	+
GWHAAZE00000002	CDS	54190780	54191215	+
GWHAAZE00000002	CDS	54193873	54193952	+
GWHAAZE00000002	CDS	54196498	54196962	+
GWHAAZE00000002	CDS	54197765	54197851	+
GWHAAZE00000002	CDS	54198221	54198346	+
GWHAAZE00000002	CDS	54198494	54198688	+
GWHAAZE00000002	CDS	54198802	54198888	+
GWHAAZE00000002	CDS	54199424	54200089	+

Transcript Sequence
>GWHTAAZE007857 ATGGATTCTCAAAGCTATGTGCTTGGACGGACTCCAAGTCCAAGCCCAACAAGAACACTCCTTCAACATTTAAAGGAGAGAGAGAAAGATGAGAGCTCTACTTCTTTACAAGTACTTGAAGAAGATTTTGACGTCAAAAAGATATTCCCATTTTCTCTTGAATCTCCATCTTTGAGGTTCGATTCGGAGATTAGGAGGTCGCCGGACAACGGAGAAGAGACTGCCGGAAAATATTCGGATGAAGGCCGGAGTTTTAGGTCGAACGGGAATGGCATTTTCTTGACGTGGAAGGATTTGTGGGTGACCGTGCCGGAGAAACAAGGTGGTCGCCGGCCGATATTGGAGGGCTTGACCGGCTATGTGCAACCCGGTGAGGTGTTGGCCATTATGGGTCCATCTGGTTGTGGAAAGTCTACTCTTCTTGATGCTTTGGCAGGGAGATTAGATTCAGACACACGTCAGACCGGCGAGATCTTAATCAACGGCCACAAACAAAAGTTAGCTTTTGGCACATCGGCCTACGTGACACAAGATGATACACTAATGACAACACTAACAGTAGAAGAAGCAGTGAACTACTCAGCCCAGCTCCAACTCCCCTCCACCATGTCAAAAGCAGAGAAGAAAGAGAGAGCTGAAACAACCATAAGAGAGATGGGCTTGCAAGATTCAATGAACACGAGAATTGGAGGGTGGAGCACAAAAGGGCTAAGTGGTGGCCAAAAGAGAAGGGTTAGCATTTGCATAGAAATCTTGACGCGCCCAAAGCTTCTCTTCCTCGATGAGCCCACAAGTGGGCTAGATAGTGCGGCATCTTACCATGTGATGAACCGTATAATCAAACTTGCTCAACGTGATAAGAGGACCGTCATCGCGTCTATTCATCAACCTAGTGGTGAAGTCTTTGAGCTTTTCCATAATCTATGCCTCTTGTGTTCGGGCAGATTGATTTATTTTGGCTCCACTTCAACAACAAATGAGTTCTTTGCTTTAAATGGATTCCCATGCCCTGCTTTGAGGAACCCATCTGATCATTACCTCAAAACTATTAACAGGGATTTTGATATGGATATTGAAGAAGAATTGGGTGGGACAATAAGTTCTTCACAAGCAATCAACGTTCTTTTCAAGTCATACCAGTCATCAGAGGCTTACCAAAAAGTTCAATTGCAAGTATCTAAGATATGTCAATTGAATGGAGGAACATTGGAAAAAAAGCGGAGCCAAGCAAGCTTCATAACTCAGTGTCTTGTTCTTACAAAGAGATCTTTTGTGAACATGTATCGCGATCTCGGCTATTACTGGTTTCGCCTTGTGATTTATATTGCCTTGTGTTTATGTATTGGGACTGTATTCTATGACGTAGGCTCCAGTTACAGCTCGATTCAGGCCAGAGGTTCAATGCTCATGTTTGTTAGTGGATTCATGACTTTTATGGCTATTGGTGGATTCCCTTCTTTTGTGGAGGACATGAAGGTTTTCACCCGAGAAAGATTGAATGGACACTATGGTGTGGCGGCTTTTGTTGTTGGAAACACATTTTCATCGCTTCCATTCTTGGTGTTGATCTCGATAATACCGGGGGTGATAGCATATTACCTTGTTGGTCTTCAAAGAGGACTTGACCACTTTGTCTACTTTGCTTTGTTGCTGTTCATTTGCTTGATGCTAGTTGAGAGCCTAATGATGGTTGTTGCGAGCATTGTACCTGATTTTCTCATGGGAATTATAGCCGGTGCAGGAATTCAAGGCATTATGCTTCTAAATGCAGGGTTTTTTCGACTGCCAAATGATATTCCTAAGCCGTTTTGGAAATACCCAATGTATTACATTGCCTTCCAAAACTACGCAAATCGAGGATTTTATAAAAACGAGTTTGAAGGATTAACATTCCCTAATCAACAAGTAGGAGGACCGCCAACAATTAATGGCGAACAGATCTTGAGAAGTTTTTGGCAAATGGAAGTCGGCTATTCTAAGTGGATAGATGTTGCCATTTTGTTTGGAATGGTGATTATGTACCGGTTTATGTTCTTTGGAATCATAAAGTGCATAGAGAAGATTAAGCCTATCATTAGAGCTATTTCGGCTATTCCTCCTCCTAACCAATCAACACATATAGAAGATTTATCTTCGACCTAG

Network for GWHGAAZE007849

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0192

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.28	ABC_tran	115	265	2.80E-28
PF19055.1	ABC2_membrane_7	295	351	1.80E-07
PF01061.25	ABC2_membrane	414	626	1.50E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.208
	SRR3591706	second leaf	0.043
	SRR3591707	mature leaf	0.152
	SRR3591708	Shoot apex	0.028
	SRR3591709	Stem	0.064
	SRR3591710	White floral bud	23.130
	SRR3591711	White flower	205.440
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	148.086
SRP173429	SRR8316895	Juvenile bud stage	0.177
	SRR8316896	Juvenile bud stage	0.156
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.045
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.071
	SRR8316898	Complete white stage	0.040
	SRR8316899	Complete white stage	0.048
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.051
	SRR8316904	Silver flowering stage	0.012
	SRR8316905	Silver flowering stage	0.032
	SRR8316906	Gold flowering stage	15.794
	SRR8316907	Gold flowering stage	2.373
	SRR8316908	Gold flowering stage	179.430
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.058
	SRR6706288	Light intensity 20%	0.013
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.048
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.091
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.090
	CNS0095597	Whole white alabastrum(diploid) 4	0.244
	CNS0095598	Silvery flower (diploied) 1	0.056
	CNS0095599	Silvery flower (diploied) 2	0.049
	CNS0095600	Silvery flower (diploied) 3	0.057
	CNS0095601	Golden flower (diploid) 1	0.073
	CNS0095602	Golden flower (diploid) 2	0.233
	CNS0095603	Golden flower (diploid) 3	0.252
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.107
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.201
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.315
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.291
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.144
	CNS0095610	Silvery flower (tetraploid) 1	0.210
	CNS0095611	Silvery flower (tetraploid) 2	0.107
	CNS0095612	Silvery flower (tetraploid) 3	0.675
	CNS0095613	Golden flower (tetraploid) 1	0.984
	CNS0095614	Golden flower (tetraploid) 2	0.939
	CNS0095615	Golden flower (tetraploid) 3	0.120
CRA001975	CRR073297	Stem 1	0.149
	CRR073298	Stem 2	0.205
	CRR073299	Stem 3	0.144
	CRR073300	Leaf 1	0.001
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.112
	CRR073305	Juvenile bud 3	0.128
	CRR073306	Third green 1	0.049
	CRR073307	Third green 2	0.060
	CRR073308	Third green 3	0.053
	CRR073309	Second white 1	0.099
	CRR073310	Second white 2	0.027
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.065
	CRR073313	Silver flowering 2	0.214
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.043
	CRR073316	Gold flowering 2	0.062
	CRR073317	Gold flowering 3	0.042
	CRR073318	Tawny withering 1	1.024
	CRR073319	Tawny withering 2	0.273
	CRR073320	Tawny withering 3	1.192