Gene detail

Detail information of GWHGAAZE007866

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006355336.1	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Solanum tuberosum]
Swissprot	tr\|Q8LAM0\|UBP4_ARATH	0	Ubiquitin carboxyl-terminal hydrolase 4
trEMBL	tr\|A0A061DJH3\|A0A061DJH3_THECC	0	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT2G22310.1	1E-174	ubiquitin-specific protease 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	54718462	54730161	+
GWHAAZE00000002	mRNA	54718462	54730161	+
GWHAAZE00000002	exon	54718462	54718563	+
GWHAAZE00000002	exon	54722487	54722600	+
GWHAAZE00000002	exon	54723962	54724060	+
GWHAAZE00000002	exon	54725510	54725677	+
GWHAAZE00000002	exon	54728257	54728486	+
GWHAAZE00000002	exon	54729756	54730161	+
GWHAAZE00000002	CDS	54718462	54718563	+
GWHAAZE00000002	CDS	54722487	54722600	+
GWHAAZE00000002	CDS	54723962	54724060	+
GWHAAZE00000002	CDS	54725510	54725677	+
GWHAAZE00000002	CDS	54728257	54728486	+
GWHAAZE00000002	CDS	54729756	54730161	+

Transcript Sequence
>GWHTAAZE007874 TCGAAACTCGAGAAAGCACTCGGCGAACAATTCCCCGAGGGCGAACGTTACTTCGGACTCGAGAATTTCGGCAATACTTGTTACTGTAACAGCGTCTTGCAGGCTCTTTATTTCTGCGTTCCATTTCGCGAACAGTTACTAGATTATTCAAATAACAAAAATTTTGCCGATGCTGAAGAAAATCTCTTGACATGCCTGGCAGACTTATTTACGCAGATAAGTTCACAAAAGAAGAAAACAGGTGTCATTGCTCCAAAGCGCTTTGTACATACATTGAAGAAGAAAAACGAGATTTTCCGCAGCTATATGCACCAGGATGCCCATGAATTTTTGAATTATTTGCTTAACCAACTTGTCGAGATACTGGAGAATGAGCCCCATTCTGGAAAGAATGATCCAGATACTCTATCACTGCCTGCAACTGCAAATGGACCAACGAACCCTCTGGCCAATGGTTCTCATAAAGAGCCTCTTGTCACCTGGGAAACAAATAAATATGGAAATCTCATATTTTATGTGGGCCAGCTTCAGGGTATACTCACAAACGAAACGAGGTGCTTAAGGTGTGAGACTGTAACTGCAAGGGATGAAACATTTTTTGACTTGAGCCTTGATATCGAGCAGAACAGTTCTATCACTAGCTGTCTCAAAAATTTTAGTTCCACCGAAACTTTGAATGCTGAGGACAAATTCTTTTGTGATAAGTGCTGCAGTTTGCAAGAAGCCCAGAAGAGAATGAAGATAAAGAAACCACCTCACATTCTGGTCATCCATCTAAAGCGGTTCAAATACATTGAACATCTCAGCCGCTACAAGAAGCTATCATACCGAGTGGTGTTCCCCCTAGAGCTGAAACTGAGCAACACGGTGGAGGACACTGACCCCGAGTACTCCCTGTTTGCTGTGGTGGTCCATGTCGGTAGTGGGCCCAACCACGGTCACTACGTCAGCCTCGTCAAGAGCCACAACCACTGGCTCTTCTTCGACGATGAGAATGTAGAGATGATTGATGAATCAGCTGTGCAGACTTTCTTCGGGTCGGCTCAGGAGTATTCGAGCAATACGGATCATGGTTATATCTTGTTTTATGAGAGAGTTGTTGATGGTACGACAAGTTGA

Network for GWHGAAZE007866

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	18	363	3.30E-61

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.067
	SRR3591706	second leaf	6.497
	SRR3591707	mature leaf	10.598
	SRR3591708	Shoot apex	5.618
	SRR3591709	Stem	5.442
	SRR3591710	White floral bud	0.869
	SRR3591711	White flower	0.677
	SRR3591712	Green floral bud	1.824
	SRR3591713	Yellow flower	0.111
SRP173429	SRR8316895	Juvenile bud stage	8.040
	SRR8316896	Juvenile bud stage	15.143
	SRR8316897	Juvenile bud stage	2.129
	SRR8316894	Third green stage	4.236
	SRR8316900	Third green stage	9.461
	SRR8316901	Third green stage	8.372
	SRR8316898	Complete white stage	3.283
	SRR8316899	Complete white stage	7.346
	SRR8316903	Complete white stage	4.546
	SRR8316902	Silver flowering stage	7.121
	SRR8316904	Silver flowering stage	8.885
	SRR8316905	Silver flowering stage	5.625
	SRR8316906	Gold flowering stage	44.677
	SRR8316907	Gold flowering stage	38.946
	SRR8316908	Gold flowering stage	21.028
SRP132670	SRR6706286	Control	4.030
	SRR6706287	Light intensity 50%	3.327
	SRR6706288	Light intensity 20%	3.570
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.391
	CNS0095593	Slightly white alabastrum(diploid) 2	10.938
	CNS0095594	Slightly white alabastrum(diploid) 3	14.625
	CNS0095595	Whole white alabastrum(diploid) 2	12.392
	CNS0095596	Whole white alabastrum(diploid) 3	7.682
	CNS0095597	Whole white alabastrum(diploid) 4	10.267
	CNS0095598	Silvery flower (diploied) 1	5.210
	CNS0095599	Silvery flower (diploied) 2	5.843
	CNS0095600	Silvery flower (diploied) 3	2.963
	CNS0095601	Golden flower (diploid) 1	6.021
	CNS0095602	Golden flower (diploid) 2	3.975
	CNS0095603	Golden flower (diploid) 3	4.535
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.480
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.180
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.095
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.717
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.760
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.669
	CNS0095610	Silvery flower (tetraploid) 1	1.990
	CNS0095611	Silvery flower (tetraploid) 2	0.967
	CNS0095612	Silvery flower (tetraploid) 3	1.467
	CNS0095613	Golden flower (tetraploid) 1	0.567
	CNS0095614	Golden flower (tetraploid) 2	1.472
	CNS0095615	Golden flower (tetraploid) 3	0.418
CRA001975	CRR073297	Stem 1	7.731
	CRR073298	Stem 2	5.559
	CRR073299	Stem 3	4.788
	CRR073300	Leaf 1	4.175
	CRR073301	Leaf 2	5.525
	CRR073302	Leaf 3	3.853
	CRR073303	Juvenile bud 1	2.961
	CRR073304	Juvenile bud 2	1.795
	CRR073305	Juvenile bud 3	2.970
	CRR073306	Third green 1	2.813
	CRR073307	Third green 2	3.979
	CRR073308	Third green 3	3.862
	CRR073309	Second white 1	1.818
	CRR073310	Second white 2	2.297
	CRR073311	Second white 3	2.437
	CRR073312	Silver flowering 1	1.944
	CRR073313	Silver flowering 2	2.063
	CRR073314	Silver flowering 3	0.543
	CRR073315	Gold flowering 1	7.219
	CRR073316	Gold flowering 2	8.348
	CRR073317	Gold flowering 3	4.714
	CRR073318	Tawny withering 1	22.661
	CRR073319	Tawny withering 2	27.285
	CRR073320	Tawny withering 3	9.538