Gene detail

Detail information of GWHGAAZE007874

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09582.1	7.17903E-45	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9C6X9\|FB315_ARATH	5E-15	Probable F-box protein At1g44080
trEMBL	tr\|A0A068UMQ5\|A0A068UMQ5_COFCA	3E-45	Coffea canephora DH200=94 genomic scaffold, scaffold_39 {ECO:0000313\|EMBL:CDP09582.1}
TAIR10	AT1G44080.1	4E-14	F-box family protein with a domain of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	54995025	54996188	+
GWHAAZE00000002	mRNA	54995025	54996188	+
GWHAAZE00000002	exon	54995025	54996188	+
GWHAAZE00000002	CDS	54995025	54996188	+

Transcript Sequence
>GWHTAAZE007882 ATGGAGAAAGTGAAAACAAACGATTGGTCTCAATTACCCTACGATCTCATCGGTTCGATCGCAAATCACTTAGGTGCTATTGAGGATTTCGCTGCATTTTCATCCGTATGTACCTCTTGGCGTTCGGCTCTCCTCCGGGAACATAAACAAAACTGGTCAAAACGCTGCGTTCCATGGCTTCTTCTTCGCAAACGTGATTTTTCCTTCAAATACCGCGAATACTTTTTGATTCCTACCTTGAACAAGAAAAAGAACCAATACAATGTTGTGGAGAAGGGACAGCCACTCATAACCACGGCAAAGAGTTGCTGGGGATCTTCAATCGGTTGGATCTTCACCGTATCTCATGATAATAGCACCGCACTCATTAACCCTCTAACCGGAGTTCAAATCACTCTCCCCCCGCTTACTAAATCTATACAAAGAGCCCTAGTATTCCTTAATGGCACTGATAACAATAACAACAATAATAATATCTTTGTGATGGTAATTTCTGAGTTCTATGACCGCAATAGGTTAGCTTTTGCTAGGCCGGGTTTCGGAGAGTGGATTACTCTACAAGATCATGAAATTGATGGCTTTGATGACTGGGGTTGGTACAAGGATAAGATTCGCTTGGGCGTTATTGATGTGGCTTGCTATGAGGGTATGATTCTCGGGGTTCGTGTCAACGGGGCTCTGGTCATGTGTGAGACTGATAATATTTCGAATCCGAGGGTTACTAATTTTGCTCCTCCACCCGAGTTTGTTAATTTCGATAATCTGGGGATGGTTTATTTGATAGAATCAGCAGGAGATTTACTGATGGCATTGCTAAGGGACAAATTTCGCAAGAAAAATGATGCTTTTCAGGTTTATAAGTTTGATATTGAGACTAGAAGATGGGCGGAATTGGATGATTTGGGAGATCGGGCATTGTTCTTGGGTGATAATTATTCAATTTCTGTGTCGCAGGCCAATGGGGTTGATTGCATTGGTAATTGCATTTATTCCGGTACAAGGGTGGGGTTGGTCATATTTTATATGAAGGATAGGCGACCAGCGGTCTATAGTTTTCCTTATTTTTCGGAGAAATACAGACGTGAGTTTACAACGGGGGAACTAGCTAGCCTTCTTAATCAGTTCAATTGGGGGCCAGTTTGGCTATTGCCTAGTTTTTCATAG

Network for GWHGAAZE007874

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	8	46	5.40E-06
PF03478.19	DUF295	297	331	1.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.487
	SRR3591706	second leaf	3.856
	SRR3591707	mature leaf	2.917
	SRR3591708	Shoot apex	8.859
	SRR3591709	Stem	7.493
	SRR3591710	White floral bud	12.040
	SRR3591711	White flower	11.361
	SRR3591712	Green floral bud	9.952
	SRR3591713	Yellow flower	10.121
SRP173429	SRR8316895	Juvenile bud stage	6.914
	SRR8316896	Juvenile bud stage	9.411
	SRR8316897	Juvenile bud stage	3.474
	SRR8316894	Third green stage	4.693
	SRR8316900	Third green stage	12.643
	SRR8316901	Third green stage	9.774
	SRR8316898	Complete white stage	7.948
	SRR8316899	Complete white stage	14.043
	SRR8316903	Complete white stage	12.272
	SRR8316902	Silver flowering stage	7.379
	SRR8316904	Silver flowering stage	10.386
	SRR8316905	Silver flowering stage	4.967
	SRR8316906	Gold flowering stage	14.113
	SRR8316907	Gold flowering stage	13.302
	SRR8316908	Gold flowering stage	11.058
SRP132670	SRR6706286	Control	13.411
	SRR6706287	Light intensity 50%	11.937
	SRR6706288	Light intensity 20%	11.362
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.725
	CNS0095593	Slightly white alabastrum(diploid) 2	8.585
	CNS0095594	Slightly white alabastrum(diploid) 3	7.164
	CNS0095595	Whole white alabastrum(diploid) 2	10.080
	CNS0095596	Whole white alabastrum(diploid) 3	8.893
	CNS0095597	Whole white alabastrum(diploid) 4	8.748
	CNS0095598	Silvery flower (diploied) 1	6.080
	CNS0095599	Silvery flower (diploied) 2	6.681
	CNS0095600	Silvery flower (diploied) 3	14.823
	CNS0095601	Golden flower (diploid) 1	9.921
	CNS0095602	Golden flower (diploid) 2	10.053
	CNS0095603	Golden flower (diploid) 3	10.971
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.058
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.957
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.199
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.405
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.670
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.581
	CNS0095610	Silvery flower (tetraploid) 1	16.787
	CNS0095611	Silvery flower (tetraploid) 2	16.103
	CNS0095612	Silvery flower (tetraploid) 3	21.047
	CNS0095613	Golden flower (tetraploid) 1	11.926
	CNS0095614	Golden flower (tetraploid) 2	15.010
	CNS0095615	Golden flower (tetraploid) 3	13.524
CRA001975	CRR073297	Stem 1	9.488
	CRR073298	Stem 2	7.028
	CRR073299	Stem 3	7.172
	CRR073300	Leaf 1	7.883
	CRR073301	Leaf 2	7.984
	CRR073302	Leaf 3	6.298
	CRR073303	Juvenile bud 1	6.741
	CRR073304	Juvenile bud 2	4.914
	CRR073305	Juvenile bud 3	6.472
	CRR073306	Third green 1	7.572
	CRR073307	Third green 2	6.327
	CRR073308	Third green 3	7.435
	CRR073309	Second white 1	5.678
	CRR073310	Second white 2	5.028
	CRR073311	Second white 3	4.167
	CRR073312	Silver flowering 1	7.373
	CRR073313	Silver flowering 2	3.178
	CRR073314	Silver flowering 3	4.295
	CRR073315	Gold flowering 1	0.791
	CRR073316	Gold flowering 2	1.910
	CRR073317	Gold flowering 3	1.475
	CRR073318	Tawny withering 1	2.389
	CRR073319	Tawny withering 2	3.677
	CRR073320	Tawny withering 3	4.834