Gene detail

Detail information of GWHGAAZE007895

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009757931.1	0	PREDICTED: 66 kDa stress protein-like [Nicotiana sylvestris]
Swissprot	tr\|Q9FLX9\|NLE1_ARATH	2E-10	Notchless protein homolog
trEMBL	tr\|M5WDW0\|M5WDW0_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11471.1}
TAIR10	AT3G18060.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	55681024	55688844	+
GWHAAZE00000002	mRNA	55681024	55688844	+
GWHAAZE00000002	exon	55681024	55681206	+
GWHAAZE00000002	exon	55681873	55682087	+
GWHAAZE00000002	exon	55682941	55683102	+
GWHAAZE00000002	exon	55683758	55683944	+
GWHAAZE00000002	exon	55685535	55685963	+
GWHAAZE00000002	exon	55687332	55687745	+
GWHAAZE00000002	exon	55688590	55688844	+
GWHAAZE00000002	CDS	55681024	55681206	+
GWHAAZE00000002	CDS	55681873	55682087	+
GWHAAZE00000002	CDS	55682941	55683102	+
GWHAAZE00000002	CDS	55683758	55683944	+
GWHAAZE00000002	CDS	55685535	55685963	+
GWHAAZE00000002	CDS	55687332	55687745	+
GWHAAZE00000002	CDS	55688590	55688844	+

Transcript Sequence
>GWHTAAZE007903 ATGTCTACAACTACGCTTGTAGAGACCTACGCCTGCGTACCCTCAACCGAGCGAGGCCGAGGGATCCTAATCGCAGGCGACGCCAAATCCAACCGAATTCTATATTGCAATGGCCGATCGGTCTTCCTTCGGTACCTCGACAGGCCACTCGAAGTCTCCGTCTACAATGAACACGCCTACCAGGTGACTGTGGCTCGGTTCTCGCCCAACGGGGAGTGGATTGCATCGGCGGATGTGTCAGGGATCATGAGGATATGGGGTACTCACAATGACTTTGTACTCAAGAACGAGTTTCGAGTTTTATCAGGTAGGATTGATGATCTTCAGTGGTCTCCTGATGGGATGAGGATTGTGGCTTCTGGTGATGGCAAGGGCAAGTCATTCGTTCGCGCATTCATGTGGGATTCAGGAAGTAACGTGGGAGACTTTGATGGCCACTCAAGGAGAGTTTTAAGCTGTGCCTTTAAGCCAACAAGACCATTCCGCATTGTCACTTGTGGAGAGGACTTCTTGGTGAATTTTTACGAAGGACCACCTTTTAAGTTCAAGCTTTCTCAAAGGACTCACTCAAATTTTGTGAATTGTGTGAGGTTCTCTCCAGATGGCAACAAATTCATCAGTGTAAGCTCTGACAAAAAGGGTATATTATATGATGCAAAAACTGCAGAAAAAATTGGAGAGCTGTCTTCAGAGGATGCTCACACTGGTAGCATCTATGCTGTTAGTTGGAGTCCTGATAGTAAAGAGGTGCTAACCGTGTCAGCTGACAAGTCTGCAAAAGTGTGGGCAATATCCGAGGATGCAAATGGAGTGGTGAAGAAAACCCTGACATGCCCCATTACGGGTGGTGTTGAAGACATGCTCGTTGGGTGTCTGTGGCAGAATGATTATCTTGTTACAGTTTCTCTTGGTGGAACTATTTCCTTATTCTCAGCAAGTCATCTTGACAAAGACCCGCTTACTTTGTGTGGGCACTTGAAGAACGTCAACTCGTTAGCAGTTGTCAATGCCAACCAGAAAGTCATACTGTCTTGCAGCTATGACGGTCTGATCTTTAAATGGATTCAAGGCGTTGGATTTAGTGGTAGATTGGAACGGAAGAAGGTGAATAATGCTCAAATCAAATGTTTTGCTGCTGTTGAAAGCGAGATTGTTTCATCTGGATATGACAATAAGATTTGGCGGGTCCCATTACTTGAAGGAGGAGATCAATGTGGGGATGCAGATTCGGTTGATGTTGGTAGTCAGCCAAAGGACATAAGCCTTGCCCTTCTTTCTCCTGAACTGGCGTTGATTGCAATTGAAACTGGAGTAGTCCTCCTTCGTGGTACAAAGGTGGTGTCTACTACTAACCTAGGTTTCACTGTGACTGCATGCACAATAACACCTGACGGCAGTGAAGCTGTTGTGGGTGGGCAGGATGGTAAATTGCACTTGTATTCTGTTAACAGTGATACTCTTGAAGAACAGATGGTTCTTGAAAAACATCGAGGTCCCATAACCGTCATACGTTACTCTCCCGATGTTTCCATGTTTGCTTCAGGCGACTCTAATCGAGAAGCTGTCGTTTGGGATCGTGCAACACGAGAGGTGAAGCTGAAGAATATGTTATTTCACACGGCCCGCATAAACTGCTTGGCCTGGTCTCCAGATAGTAGCATGGTTGCAACTGGATCATTAGACACGTGCGTGATTATATATGAGATATCAAAGGCAGCATCAAGCCGCATAACTATAAAGGGAGCTAACTTAGGGGGCGTATATGGAGTCGCTTTTACTGACAATCATTGTGTGGTTAGCTCTGGAGAGGATGCTTGTGTTCGCATCTGGAGGATAACAAAATAA

Network for GWHGAAZE007895

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	53	86	0.025
PF00400.33	WD40	187	212	0.0077
PF00400.33	WD40	232	262	0.0028
PF00400.33	WD40	321	354	0.26
PF00400.33	WD40	539	567	0.00026
PF00400.33	WD40	580	610	0.26

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.653
	SRR3591706	second leaf	6.229
	SRR3591707	mature leaf	4.234
	SRR3591708	Shoot apex	11.953
	SRR3591709	Stem	18.178
	SRR3591710	White floral bud	16.843
	SRR3591711	White flower	13.365
	SRR3591712	Green floral bud	31.316
	SRR3591713	Yellow flower	10.467
SRP173429	SRR8316895	Juvenile bud stage	8.521
	SRR8316896	Juvenile bud stage	15.831
	SRR8316897	Juvenile bud stage	7.385
	SRR8316894	Third green stage	6.553
	SRR8316900	Third green stage	27.205
	SRR8316901	Third green stage	23.480
	SRR8316898	Complete white stage	7.343
	SRR8316899	Complete white stage	15.016
	SRR8316903	Complete white stage	11.734
	SRR8316902	Silver flowering stage	7.835
	SRR8316904	Silver flowering stage	11.333
	SRR8316905	Silver flowering stage	6.008
	SRR8316906	Gold flowering stage	15.548
	SRR8316907	Gold flowering stage	13.141
	SRR8316908	Gold flowering stage	13.988
SRP132670	SRR6706286	Control	21.036
	SRR6706287	Light intensity 50%	21.442
	SRR6706288	Light intensity 20%	21.768
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.397
	CNS0095593	Slightly white alabastrum(diploid) 2	11.837
	CNS0095594	Slightly white alabastrum(diploid) 3	12.017
	CNS0095595	Whole white alabastrum(diploid) 2	13.935
	CNS0095596	Whole white alabastrum(diploid) 3	16.958
	CNS0095597	Whole white alabastrum(diploid) 4	14.423
	CNS0095598	Silvery flower (diploied) 1	6.067
	CNS0095599	Silvery flower (diploied) 2	4.285
	CNS0095600	Silvery flower (diploied) 3	13.118
	CNS0095601	Golden flower (diploid) 1	4.165
	CNS0095602	Golden flower (diploid) 2	10.076
	CNS0095603	Golden flower (diploid) 3	9.075
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.834
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.395
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.792
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.102
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.883
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.754
	CNS0095610	Silvery flower (tetraploid) 1	13.311
	CNS0095611	Silvery flower (tetraploid) 2	12.442
	CNS0095612	Silvery flower (tetraploid) 3	20.324
	CNS0095613	Golden flower (tetraploid) 1	4.244
	CNS0095614	Golden flower (tetraploid) 2	9.899
	CNS0095615	Golden flower (tetraploid) 3	9.496
CRA001975	CRR073297	Stem 1	19.753
	CRR073298	Stem 2	17.795
	CRR073299	Stem 3	16.133
	CRR073300	Leaf 1	28.800
	CRR073301	Leaf 2	25.319
	CRR073302	Leaf 3	22.659
	CRR073303	Juvenile bud 1	26.318
	CRR073304	Juvenile bud 2	28.348
	CRR073305	Juvenile bud 3	26.930
	CRR073306	Third green 1	20.862
	CRR073307	Third green 2	18.489
	CRR073308	Third green 3	19.820
	CRR073309	Second white 1	13.515
	CRR073310	Second white 2	13.414
	CRR073311	Second white 3	14.606
	CRR073312	Silver flowering 1	14.082
	CRR073313	Silver flowering 2	15.623
	CRR073314	Silver flowering 3	14.382
	CRR073315	Gold flowering 1	3.910
	CRR073316	Gold flowering 2	6.448
	CRR073317	Gold flowering 3	7.412
	CRR073318	Tawny withering 1	15.557
	CRR073319	Tawny withering 2	10.566
	CRR073320	Tawny withering 3	12.589