Detail information of GWHGAAZE007897


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011005638.10PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like isoform X1 [Populus euphratica]
trEMBLtr|B9H574|B9H574_POPTR8E-179SAP domain-containing family protein {ECO:0000313|EMBL:EEE93325.1}
TAIR10AT4G39680.23E-83SAP domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5574977055754679+
GWHAAZE00000002mRNA5574977055754679+
GWHAAZE00000002exon5574977055751246+
GWHAAZE00000002exon5575228555752485+
GWHAAZE00000002exon5575394055754091+
GWHAAZE00000002exon5575418655754424+
GWHAAZE00000002exon5575449955754679+
GWHAAZE00000002CDS5574977055751246+
GWHAAZE00000002CDS5575228555752485+
GWHAAZE00000002CDS5575394055754091+
GWHAAZE00000002CDS5575418655754424+
GWHAAZE00000002CDS5575449955754679+
Transcript Sequence

Network for GWHGAAZE007897

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02037.28SAP14472.30E-11
PF16294.6RSB_motif7067441.70E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12875ACIN1, ACINUS Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE007897.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550556065Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf44.621
SRR3591706second leaf32.505
SRR3591707mature leaf33.927
SRR3591708Shoot apex52.479
SRR3591709Stem43.054
SRR3591710White floral bud42.867
SRR3591711White flower47.932
SRR3591712Green floral bud37.046
SRR3591713Yellow flower36.351
SRP173429 SRR8316895Juvenile bud stage 29.817
SRR8316896Juvenile bud stage 41.530
SRR8316897Juvenile bud stage 19.939
SRR8316894Third green stage 17.937
SRR8316900Third green stage 43.195
SRR8316901Third green stage 35.394
SRR8316898Complete white stage 14.520
SRR8316899Complete white stage 46.505
SRR8316903Complete white stage 32.105
SRR8316902Silver flowering stage18.360
SRR8316904Silver flowering stage31.692
SRR8316905Silver flowering stage13.943
SRR8316906Gold flowering stage 37.381
SRR8316907Gold flowering stage 38.631
SRR8316908Gold flowering stage 42.617
SRP132670SRR6706286Control47.783
SRR6706287Light intensity 50%40.181
SRR6706288Light intensity 20%40.141
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.903
CNS0095593Slightly white alabastrum(diploid) 218.552
CNS0095594Slightly white alabastrum(diploid) 317.382
CNS0095595Whole white alabastrum(diploid) 218.438
CNS0095596Whole white alabastrum(diploid) 313.378
CNS0095597Whole white alabastrum(diploid) 415.682
CNS0095598Silvery flower (diploied) 132.265
CNS0095599Silvery flower (diploied) 226.505
CNS0095600Silvery flower (diploied) 333.400
CNS0095601Golden flower (diploid) 127.350
CNS0095602Golden flower (diploid) 236.797
CNS0095603Golden flower (diploid) 335.358
CNS0095604Slightly white alabastrum(tetraploid) 128.852
CNS0095605Slightly white alabastrum(tetraploid) 221.155
CNS0095606Slightly white alabastrum(tetraploid) 355.117
CNS0095607Whole white alabastrum(tetraploid) 115.458
CNS0095608Whole white alabastrum(tetraploid) 211.202
CNS0095609Whole white alabastrum(tetraploid) 333.864
CNS0095610Silvery flower (tetraploid) 144.583
CNS0095611Silvery flower (tetraploid) 239.500
CNS0095612Silvery flower (tetraploid) 330.571
CNS0095613Golden flower (tetraploid) 124.996
CNS0095614Golden flower (tetraploid) 236.481
CNS0095615Golden flower (tetraploid) 328.552
CRA001975CRR073297Stem 157.587
CRR073298Stem 251.412
CRR073299Stem 328.873
CRR073300Leaf 147.634
CRR073301Leaf 242.526
CRR073302Leaf 318.550
CRR073303Juvenile bud 121.001
CRR073304Juvenile bud 215.991
CRR073305Juvenile bud 333.103
CRR073306Third green 111.701
CRR073307Third green 28.944
CRR073308Third green 314.934
CRR073309Second white 17.189
CRR073310Second white 212.196
CRR073311Second white 312.426
CRR073312Silver flowering 19.715
CRR073313Silver flowering 29.882
CRR073314Silver flowering 312.969
CRR073315Gold flowering 113.841
CRR073316Gold flowering 223.049
CRR073317Gold flowering 38.977
CRR073318Tawny withering 125.711
CRR073319Tawny withering 223.282
CRR073320Tawny withering 326.413