Gene detail

Detail information of GWHGAAZE007897

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011005638.1	0	PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like isoform X1 [Populus euphratica]
trEMBL	tr\|B9H574\|B9H574_POPTR	8E-179	SAP domain-containing family protein {ECO:0000313\|EMBL:EEE93325.1}
TAIR10	AT4G39680.2	3E-83	SAP domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	55749770	55754679	+
GWHAAZE00000002	mRNA	55749770	55754679	+
GWHAAZE00000002	exon	55749770	55751246	+
GWHAAZE00000002	exon	55752285	55752485	+
GWHAAZE00000002	exon	55753940	55754091	+
GWHAAZE00000002	exon	55754186	55754424	+
GWHAAZE00000002	exon	55754499	55754679	+
GWHAAZE00000002	CDS	55749770	55751246	+
GWHAAZE00000002	CDS	55752285	55752485	+
GWHAAZE00000002	CDS	55753940	55754091	+
GWHAAZE00000002	CDS	55754186	55754424	+
GWHAAZE00000002	CDS	55754499	55754679	+

Transcript Sequence
>GWHTAAZE007905 ATGTCGTCGAAATATCCTAATCTTGACAATAAACCAATTGATCAATGGAAGGTCACGGAACTTAAAGAGGAACTTAGGAGAAGGAAATTACCCGTAAAGGGGTTGAAAGATGATTTGATAAAGCGATTGGACGAAGCGCTTCGTGCTGAAAGCGAAAGTGCTAAAGATTCTGTTGATAATGGTCTTGATTGTGATCAGCATGCGGTTCAGTCCGAAGATGGAAGCACAGCCCCCAATGCTGCTTTAAAAACGAGGGACATTATTGAGGAGAGTGATAACAAGAACGAAGAAACTGAAAACACAAGGGATATTATCTATGAGAGTGATAACAAGATTGCAGAATCTGAAACAAGGGTCATTATCAATGAGAGTCATAACAAGAATGAAGAAGAATCTGAAACAAGGGTCATTATCGATGAGAGTCATAACAAGAATGAAGAAACTGGAAAAACGAGGGACACTATCGGTGAGAGTGATAGCAAGAACGAAGAAACTGAAAAGACGAGGGGCATTGTTGAGGAGAGTGAGAACAAGAATGAAGTAACTGAAACAATGGGGAACATTATCGATGAGAGGAATGATAAGAATGAAGAAACTGGGGACGCTATAGTTGAGAGTGGTGAAAAGATTGAGCTTGTGGACAATGATAAGATTCAGGTCGACAAGGATGATGGTTTGGGGTCATTGGGTAAAGAATTTGTCAGTGGCAATGATTCTACTGGGGTGGAAGAGGAGCGGGGGTTTATGGTCCAAGAGACAACTGTCGAAACTACTGTCACAGTTACTGAGAGCGTGGCGACTGAAATTGCGCTTAGTGGGCCAGAGTTCCAGAACAGTGAAACCCAGAACTTGCAGCTGGTGAACGAGGAGGATTCAAGGCCTCCACAAGAGGAAGCGAAGTTCGATTCATCTGATTTTAACAACAACCAGGTATTTGAGGTCAGCCAAGTAAAATCTGATTCTATTTCTACTGATACTACTGTCTCAATTAATGAAAAGAATGAACTACTAAAGGATAATGTAATTGCTGATGATGTCAAATTAGAACTTGATGATGTTAAGCCTGAGATTGCACAGCCACTATCATCTGACAATATTATTGTGGATAGTGGCAAGTTACAAGCGATGGATGTTGAGCTAAAGGGGAACAAGGTTACTAGTGAGGGTACTGGTGGCAACAATGCTGAAAGTGCAGATATAGGAAAGAAAAATGATAGTGGAGATGTAGGTTCTGCAGAAAAGTTAAATTTGGACCGAAGTTCTGGTGATGATTCTATGGAGGAGGATGTTTTGGAGAGTAAGGAAATTGATTTGAAGTTTAATTCTGATGATGTGTGTGAGAAAAATGAGGTGCCTGTGGTGAAGGAGGAAGGTGCTGTTGGTGTTATTGTTGAGGATTTACCTGATGACAAGAAAAGTGTGAACGCTAATGATAAAAGTGGACCTGCTGGGCCAGATGTCAAAAGAAAATTTGATGGCCAAGAAACCGCTGTCAACAATGAGAGTACAAAGAGACAGAGAAGGTGGAACACTGAAGGCCTGAAAGTCATTGAACCCCAAAGCATCAATATTTCGCCTTCTACTACTACCCCTAAAGATGCATTCCAGCCCATTGGAAAGCGGAGCTTCTCTAGATCTGATTCTATGGCTAGTGTGGAAGCACCGAAGGAACGTGTTGTTCCACCATCATCAAAGCCTTCGACTAATTCTCTTAGAATTGATCGGTTTCTGCGACCGTTTACCTTGAAAGCCGTACAAGAACTTCTGGGCAAAACTGGTAGTGTCACCAGTTTTTGGATGGACCATATCAAAACCCACTGCTACGTCACTTATTCATCTGTTGAAGAAGCTGTAGAGACTCGAAATGCTGTTTACAACTTACAATGGCCTCCAAACGGAGGGCGCCTTCTGGTGGCTGAGTTTGTTGATCCCCAGGAAGTTAAAACACGTGTGGAGGGTCCTCCTCCATCTCCAGCAACTCCTGCCACCACAGCTCCTCCTACTTTCCCACCACCAGCTGCAGCCACCGCCACCAAGAAGCCCTCCCCTGCCCCTCCCCACGCCTACAGGGAACGTCCCCTCCCACCCCCACCCCCACTCCCACTCCCTGAGAAAGTTGACCCTCCGATTGTCACTCTGGACGATCTTTTTAGGAAGACAAAAGCGACCCCACGCATCTACTATCTACCACTGTCCGATGAAGAAGTTGCGGTGAAGGCCAAGGCACAGGGGAAAGCTGCCATGCAGTAG

Network for GWHGAAZE007897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02037.28	SAP	14	47	2.30E-11
PF16294.6	RSB_motif	706	744	1.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12875	ACIN1, ACINUS	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.621
	SRR3591706	second leaf	32.505
	SRR3591707	mature leaf	33.927
	SRR3591708	Shoot apex	52.479
	SRR3591709	Stem	43.054
	SRR3591710	White floral bud	42.867
	SRR3591711	White flower	47.932
	SRR3591712	Green floral bud	37.046
	SRR3591713	Yellow flower	36.351
SRP173429	SRR8316895	Juvenile bud stage	29.817
	SRR8316896	Juvenile bud stage	41.530
	SRR8316897	Juvenile bud stage	19.939
	SRR8316894	Third green stage	17.937
	SRR8316900	Third green stage	43.195
	SRR8316901	Third green stage	35.394
	SRR8316898	Complete white stage	14.520
	SRR8316899	Complete white stage	46.505
	SRR8316903	Complete white stage	32.105
	SRR8316902	Silver flowering stage	18.360
	SRR8316904	Silver flowering stage	31.692
	SRR8316905	Silver flowering stage	13.943
	SRR8316906	Gold flowering stage	37.381
	SRR8316907	Gold flowering stage	38.631
	SRR8316908	Gold flowering stage	42.617
SRP132670	SRR6706286	Control	47.783
	SRR6706287	Light intensity 50%	40.181
	SRR6706288	Light intensity 20%	40.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.903
	CNS0095593	Slightly white alabastrum(diploid) 2	18.552
	CNS0095594	Slightly white alabastrum(diploid) 3	17.382
	CNS0095595	Whole white alabastrum(diploid) 2	18.438
	CNS0095596	Whole white alabastrum(diploid) 3	13.378
	CNS0095597	Whole white alabastrum(diploid) 4	15.682
	CNS0095598	Silvery flower (diploied) 1	32.265
	CNS0095599	Silvery flower (diploied) 2	26.505
	CNS0095600	Silvery flower (diploied) 3	33.400
	CNS0095601	Golden flower (diploid) 1	27.350
	CNS0095602	Golden flower (diploid) 2	36.797
	CNS0095603	Golden flower (diploid) 3	35.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.852
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.155
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.117
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.864
	CNS0095610	Silvery flower (tetraploid) 1	44.583
	CNS0095611	Silvery flower (tetraploid) 2	39.500
	CNS0095612	Silvery flower (tetraploid) 3	30.571
	CNS0095613	Golden flower (tetraploid) 1	24.996
	CNS0095614	Golden flower (tetraploid) 2	36.481
	CNS0095615	Golden flower (tetraploid) 3	28.552
CRA001975	CRR073297	Stem 1	57.587
	CRR073298	Stem 2	51.412
	CRR073299	Stem 3	28.873
	CRR073300	Leaf 1	47.634
	CRR073301	Leaf 2	42.526
	CRR073302	Leaf 3	18.550
	CRR073303	Juvenile bud 1	21.001
	CRR073304	Juvenile bud 2	15.991
	CRR073305	Juvenile bud 3	33.103
	CRR073306	Third green 1	11.701
	CRR073307	Third green 2	8.944
	CRR073308	Third green 3	14.934
	CRR073309	Second white 1	7.189
	CRR073310	Second white 2	12.196
	CRR073311	Second white 3	12.426
	CRR073312	Silver flowering 1	9.715
	CRR073313	Silver flowering 2	9.882
	CRR073314	Silver flowering 3	12.969
	CRR073315	Gold flowering 1	13.841
	CRR073316	Gold flowering 2	23.049
	CRR073317	Gold flowering 3	8.977
	CRR073318	Tawny withering 1	25.711
	CRR073319	Tawny withering 2	23.282
	CRR073320	Tawny withering 3	26.413