Gene detail

Detail information of GWHGAAZE007901

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652849.1	3.6101E-157	PREDICTED: transcription factor TGA1 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q39237\|TGA1_ARATH	1E-140	Transcription factor TGA1
trEMBL	tr\|A0A061DI74\|A0A061DI74_THECC	1E-156	BZIP transcription factor family protein isoform 1 {ECO:0000313\|EMBL:EOX92234.1}
TAIR10	AT5G65210.5	1E-104	bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	55995810	56002563	+
GWHAAZE00000002	mRNA	55995810	56002563	+
GWHAAZE00000002	exon	55995810	55995965	+
GWHAAZE00000002	exon	55996066	55996140	+
GWHAAZE00000002	exon	55997535	55997594	+
GWHAAZE00000002	exon	55997697	55997774	+
GWHAAZE00000002	exon	55998539	55998835	+
GWHAAZE00000002	exon	56000048	56000278	+
GWHAAZE00000002	exon	56002411	56002563	+
GWHAAZE00000002	CDS	55995810	55995965	+
GWHAAZE00000002	CDS	55996066	55996140	+
GWHAAZE00000002	CDS	55997535	55997594	+
GWHAAZE00000002	CDS	55997697	55997774	+
GWHAAZE00000002	CDS	55998539	55998835	+
GWHAAZE00000002	CDS	56000048	56000278	+
GWHAAZE00000002	CDS	56002411	56002563	+

Transcript Sequence
>GWHTAAZE007909 ATGCATTCTCCATTTACCCAGTATGCCACCTCAAGCAGGATGGGTGTTTACGATCCAATCAACCAGATGGGTATGTGGGGAGATTTTAAAGATAATGGCTGTTTGAATACGCCCACATCCGTGATTATAGAAGCTGACACAAAACTAGACAGCCAGTCAGAGGACAATTCAAACGGAACTCATGGACCTTGTAACAATTATGACGAAGAGGCGATTAAACCTACTGATAAGGTTATGAAACGTTTAGCAAAAAACCGTGAGGCTGCTCGTAAAAGTCGTTTGCGGAAAAAGGCCTATGTTCAGCAGTTAGAAACAAGTCGGTTGAAACTGCTTCAATTGGAACAAGAGCTTGAACAAGTTAGGCAACAGGCTCTATTCTTTGTTCATGCAGGTATTGGTGCATTTGAGAGAGAATATGGACAGTGGGTGAAAGAACAAAATAGACTAACTTTCAAACTGAGGACCGCTTTGGAATATCATTTAGCTGATGAGGTACAGCTGGGTACGCTTGTCAATGGGGGCATGGAACTCTATTCTGATCTATTCCGCATGAAAGCAAGTGCTGCAAAATCTGATGTATTCTATCTCATGACTGGCATGTGGAGAACTTCATCTGAACGCTTTCTCCTATGGATTGGAGGGTTTCGCCCTTCAGAGCTTCTAAAGGTTCTACTACCGCAGCTTGACCTATCGGACCAACAAGCTTCAGAAGTTGGTAATCTAAGGCAATCATGCCAGCAAGCAGAAGATGCTATCTCACAAGGAATGAATCAACTACAGCAAACTGTGGCCGAGGCTGTGGGAGCAGCTGGTGTTCAACTGTGTCGGGGAATCTACAATCGGCAAGTGGCTAATGCATTGGACAGGTTGGAAGCCGTGGTGAGCTTTGTCAATCAGGCGGATCATCTTCGTCAAGAAACTCTACAACAAATGACACGCATCTTAGCGATCCCTCAACAAGCCCGAGCCTTGGTTGCGTTAGGCGATTACTTCCAAAGCCTCCGAGCTCTTAGTCAGCTATGGGACACTCGTCCTCACAAGCCTTCCTAA

Network for GWHGAAZE007901

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	75	112	2.20E-08
PF14144.7	DOG1	152	225	3.10E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K14431	TGA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006351	biological_process	transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.283
	SRR3591706	second leaf	4.506
	SRR3591707	mature leaf	8.975
	SRR3591708	Shoot apex	8.243
	SRR3591709	Stem	9.445
	SRR3591710	White floral bud	7.143
	SRR3591711	White flower	5.145
	SRR3591712	Green floral bud	6.698
	SRR3591713	Yellow flower	1.222
SRP173429	SRR8316895	Juvenile bud stage	4.011
	SRR8316896	Juvenile bud stage	3.632
	SRR8316897	Juvenile bud stage	1.414
	SRR8316894	Third green stage	1.378
	SRR8316900	Third green stage	4.990
	SRR8316901	Third green stage	5.553
	SRR8316898	Complete white stage	5.015
	SRR8316899	Complete white stage	8.303
	SRR8316903	Complete white stage	8.496
	SRR8316902	Silver flowering stage	3.105
	SRR8316904	Silver flowering stage	6.173
	SRR8316905	Silver flowering stage	0.084
	SRR8316906	Gold flowering stage	0.720
	SRR8316907	Gold flowering stage	1.605
	SRR8316908	Gold flowering stage	0.998
SRP132670	SRR6706286	Control	4.195
	SRR6706287	Light intensity 50%	4.930
	SRR6706288	Light intensity 20%	5.404
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.181
	CNS0095593	Slightly white alabastrum(diploid) 2	3.149
	CNS0095594	Slightly white alabastrum(diploid) 3	2.856
	CNS0095595	Whole white alabastrum(diploid) 2	2.160
	CNS0095596	Whole white alabastrum(diploid) 3	1.890
	CNS0095597	Whole white alabastrum(diploid) 4	1.561
	CNS0095598	Silvery flower (diploied) 1	2.221
	CNS0095599	Silvery flower (diploied) 2	1.327
	CNS0095600	Silvery flower (diploied) 3	1.659
	CNS0095601	Golden flower (diploid) 1	1.050
	CNS0095602	Golden flower (diploid) 2	2.074
	CNS0095603	Golden flower (diploid) 3	1.228
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.492
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.373
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.564
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.966
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.403
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.674
	CNS0095610	Silvery flower (tetraploid) 1	1.606
	CNS0095611	Silvery flower (tetraploid) 2	1.983
	CNS0095612	Silvery flower (tetraploid) 3	0.657
	CNS0095613	Golden flower (tetraploid) 1	0.543
	CNS0095614	Golden flower (tetraploid) 2	0.623
	CNS0095615	Golden flower (tetraploid) 3	0.563
CRA001975	CRR073297	Stem 1	5.201
	CRR073298	Stem 2	4.057
	CRR073299	Stem 3	4.446
	CRR073300	Leaf 1	8.263
	CRR073301	Leaf 2	6.064
	CRR073302	Leaf 3	4.971
	CRR073303	Juvenile bud 1	3.894
	CRR073304	Juvenile bud 2	4.045
	CRR073305	Juvenile bud 3	7.328
	CRR073306	Third green 1	0.632
	CRR073307	Third green 2	0.973
	CRR073308	Third green 3	1.616
	CRR073309	Second white 1	0.321
	CRR073310	Second white 2	0.145
	CRR073311	Second white 3	0.051
	CRR073312	Silver flowering 1	0.339
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.220
	CRR073316	Gold flowering 2	7.236
	CRR073317	Gold flowering 3	3.470
	CRR073318	Tawny withering 1	3.490
	CRR073319	Tawny withering 2	5.201
	CRR073320	Tawny withering 3	4.246