Gene detail

Detail information of GWHGAAZE007913

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN66347.1	0	hypothetical protein VITISV_022486 [Vitis vinifera]
Swissprot	tr\|Q9SIZ8\|RKP_ARATH	0	E3 ubiquitin-protein ligase RKP
trEMBL	tr\|A5C461\|A5C461_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66347.1}
TAIR10	AT2G22010.1	2E-171	related to KPC1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	56270722	56276797	+
GWHAAZE00000002	mRNA	56270722	56276797	+
GWHAAZE00000002	exon	56270722	56270765	+
GWHAAZE00000002	exon	56270886	56271024	+
GWHAAZE00000002	exon	56271738	56271821	+
GWHAAZE00000002	exon	56272471	56272752	+
GWHAAZE00000002	exon	56273170	56273317	+
GWHAAZE00000002	exon	56274137	56274183	+
GWHAAZE00000002	exon	56274336	56274535	+
GWHAAZE00000002	exon	56275357	56275561	+
GWHAAZE00000002	exon	56276492	56276797	+
GWHAAZE00000002	CDS	56270722	56270765	+
GWHAAZE00000002	CDS	56270886	56271024	+
GWHAAZE00000002	CDS	56271738	56271821	+
GWHAAZE00000002	CDS	56272471	56272752	+
GWHAAZE00000002	CDS	56273170	56273317	+
GWHAAZE00000002	CDS	56274137	56274183	+
GWHAAZE00000002	CDS	56274336	56274535	+
GWHAAZE00000002	CDS	56275357	56275561	+
GWHAAZE00000002	CDS	56276492	56276797	+

Transcript Sequence
>GWHTAAZE007921 ATGTTCTGTCGAATGGAAACATATTGCATATTTGTGCGGCTATTGTACCGTCTCTCTCTGTTTACTAGATGGAAGCAAAGGGGAATGTATGCAGCATGCATTTGGATTGTTCAATTGCTTTTGGTTCTTAGCAAAATGGATTCAGTCTTCATCTATGTTCCTGAATTTTATTTGGAAACTCTGGTTGACTGCTTCCATGTGTTACGTAAGAGTGATCCTCCATTTGTCCCCGCTGCAATATTCATCAAGCAAGGGCTGGCTTCTTTTGTTACTTTTGTTGCGACCCACTTCAATGATCCAAGGATATCAAGTGCGGAATTGAGGGATCTTCTTCTCCAATCTATATCTGTGTTGGTACAATACAAGGATTTTTTAGCTGCTTTTGAGAGCAACGAAGCAGCAACTCAAAGCATGCCAAGAGCATTGTTGTCAGCATTTGATAACAGATCCTGGATCCCTGTTACAAATATATTTCTGCGGTTGTGCAAGGGTTCTGGCTTTGGTTCTTCTAAGCATGGAGAATCTTCATCATCTTCTGTTGCTTTTCAGGAATTGTTGCGGGAAGCTTGCATCCTGGATGAAGAATTATTCTCAGGGTTTCTCAACCGCCTGTTTAACACCCTTAGCTGGGCGATGACTGAGTTTTCATTTTCAATTCGAGAAATGCAGGAAAAATACAAGGTAGAATGTCCTTCAAGGTTTGAACCTGGTTCCCAAGTAGATCCCGAAGTTCCCATGGCCAAAGTCATGGAGTTCCAGCAAAGGAAATGCAGTGTTATATTTGACCTCTCATGCAATCTTGCAAGGGTATTGGAGTTTTGCACCCGTGAAATCCCTCAAGCCTTCCTTTCAGGGGCAGATACAAATATGCGTAGGCTCATTGAGTTGATCGTCTTTATCCTAAATCACCTGACTTCAGTGGCAGATCCCGAGTTTTTTGACTTGACACTTAGAAGACCTGGTCAACCTTCGGAGAAAGTAAACAGAGGCATGATTTTAGCGCCGCTTGCTGGCATAATCTTAAATCTGTTGGATGCTAATGCAGTGAATGACTGCAGGGAGAAGAATGATATGTTAGGGGTATTTGCAAGTATGGACTGCCTCGATACTGTTCTTTGTGGATTTCAGTATCTCTTAGACTACAATTGGGCTGGATCATTCAGTGGTGATGCGTATCTTGCAAAACTCAAGGAGCTCGAGGAATTCTTGACTCTCCTAATTTCTCATGCCACCGAATCACGGGCAGTTACTCGAATTGGATTCGAGGCAGAAACAGGGGGAGACGATAGCGTGTGCTGCATCTGTTATGCACGTGATGCAGATGCGAAGTTTGTACCCTGCTCGCACATATCTTGCTTTGGCTGCATATCAAGGCATCTCCTCAATTGCCATAGATGTTTCTTTTGCAATGCAACTGTTGTCCAAGTTGATCAGATCGAGTCGAAGACTGCATAA

Network for GWHGAAZE007913

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.7	zf-C3HC4_3	429	475	2.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.100
	SRR3591706	second leaf	15.805
	SRR3591707	mature leaf	26.752
	SRR3591708	Shoot apex	18.335
	SRR3591709	Stem	27.726
	SRR3591710	White floral bud	29.708
	SRR3591711	White flower	34.364
	SRR3591712	Green floral bud	31.195
	SRR3591713	Yellow flower	29.993
SRP173429	SRR8316895	Juvenile bud stage	14.322
	SRR8316896	Juvenile bud stage	21.971
	SRR8316897	Juvenile bud stage	11.294
	SRR8316894	Third green stage	8.966
	SRR8316900	Third green stage	22.927
	SRR8316901	Third green stage	22.574
	SRR8316898	Complete white stage	7.498
	SRR8316899	Complete white stage	33.917
	SRR8316903	Complete white stage	16.849
	SRR8316902	Silver flowering stage	12.451
	SRR8316904	Silver flowering stage	19.127
	SRR8316905	Silver flowering stage	6.954
	SRR8316906	Gold flowering stage	25.519
	SRR8316907	Gold flowering stage	21.268
	SRR8316908	Gold flowering stage	24.480
SRP132670	SRR6706286	Control	8.716
	SRR6706287	Light intensity 50%	9.810
	SRR6706288	Light intensity 20%	11.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.287
	CNS0095593	Slightly white alabastrum(diploid) 2	22.114
	CNS0095594	Slightly white alabastrum(diploid) 3	17.983
	CNS0095595	Whole white alabastrum(diploid) 2	19.877
	CNS0095596	Whole white alabastrum(diploid) 3	17.755
	CNS0095597	Whole white alabastrum(diploid) 4	16.202
	CNS0095598	Silvery flower (diploied) 1	25.269
	CNS0095599	Silvery flower (diploied) 2	22.452
	CNS0095600	Silvery flower (diploied) 3	28.884
	CNS0095601	Golden flower (diploid) 1	22.659
	CNS0095602	Golden flower (diploid) 2	33.145
	CNS0095603	Golden flower (diploid) 3	31.086
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.648
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.923
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.366
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.266
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.595
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.651
	CNS0095610	Silvery flower (tetraploid) 1	33.193
	CNS0095611	Silvery flower (tetraploid) 2	34.887
	CNS0095612	Silvery flower (tetraploid) 3	43.548
	CNS0095613	Golden flower (tetraploid) 1	23.666
	CNS0095614	Golden flower (tetraploid) 2	33.287
	CNS0095615	Golden flower (tetraploid) 3	38.519
CRA001975	CRR073297	Stem 1	26.690
	CRR073298	Stem 2	23.748
	CRR073299	Stem 3	21.321
	CRR073300	Leaf 1	30.884
	CRR073301	Leaf 2	25.273
	CRR073302	Leaf 3	21.818
	CRR073303	Juvenile bud 1	30.875
	CRR073304	Juvenile bud 2	21.843
	CRR073305	Juvenile bud 3	33.073
	CRR073306	Third green 1	18.847
	CRR073307	Third green 2	15.512
	CRR073308	Third green 3	18.412
	CRR073309	Second white 1	18.764
	CRR073310	Second white 2	22.655
	CRR073311	Second white 3	24.378
	CRR073312	Silver flowering 1	22.014
	CRR073313	Silver flowering 2	18.707
	CRR073314	Silver flowering 3	16.810
	CRR073315	Gold flowering 1	12.001
	CRR073316	Gold flowering 2	17.259
	CRR073317	Gold flowering 3	13.276
	CRR073318	Tawny withering 1	21.429
	CRR073319	Tawny withering 2	22.612
	CRR073320	Tawny withering 3	17.299