Gene detail

Detail information of GWHGAAZE007920

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010065667.1	1.75424E-41	PREDICTED: B3 domain-containing protein REM13-like isoform X1 [Eucalyptus grandis]
Swissprot	tr\|Q9XIB5\|REM19_ARATH	1E-15	B3 domain-containing protein REM19
trEMBL	tr\|A0A059BBI7\|A0A059BBI7_EUCGR	9E-42	Uncharacterized protein {ECO:0000313\|EMBL:KCW63266.1}
TAIR10	AT3G18990.1	4E-14	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	56429070	56432829	-
GWHAAZE00000002	mRNA	56429070	56432829	-
GWHAAZE00000002	exon	56429070	56429336	-
GWHAAZE00000002	exon	56429503	56429657	-
GWHAAZE00000002	exon	56430522	56430822	-
GWHAAZE00000002	exon	56431972	56432138	-
GWHAAZE00000002	exon	56432538	56432731	-
GWHAAZE00000002	exon	56432816	56432829	-
GWHAAZE00000002	CDS	56432816	56432829	-
GWHAAZE00000002	CDS	56432538	56432731	-
GWHAAZE00000002	CDS	56431972	56432138	-
GWHAAZE00000002	CDS	56430522	56430822	-
GWHAAZE00000002	CDS	56429503	56429657	-
GWHAAZE00000002	CDS	56429070	56429336	-

Transcript Sequence
>GWHTAAZE007928 ATGTCTTGTCACTTGATCCCACCAGCATTCATCAAGTACTTCAAGGGTGTTCCGCCAACGAAGTCCATACTTAAGACTCCTGCTAAAACAACATGGTGCATTGATGTTAACAAGGTTGACAACTATTTCTTTTTTCAAAAGGGTTGGCCTGAATTTGTGCGAGATAATTCTTTAGAGTTCGGAGATTTTCTAATTTTCTGCTACATTGGCAATTCCGAACAGAAGATGTGCATAGATAGTACTGTAGAGATGGGTACTACTAGAATGCCAAGTCAAGAGAATATTGGAGATTTTGGAACTCCATGTGAATTTGGCTCCAGGAAGCCATTCTTCGAGACTATTTTGAAACCAGCTTATGTTTATTCCAGGTTACTGCACATCCCAACGGAATTCGTTAAGAGCTACATGTCTGCATATAGAAAAACGGCTAGGCTTAAGCATTCAAATAAGTCATGGATGGTGAAGTTGATTCACTACGGAGAAAGACTTGTATTTTCTGCCAGGTGGTGCAAATTTGTAGCCGATAACACTCTGAAAGAAGGCGATGTTTGCAAGTTTGAGCTGATTCGAAGAAATGATTATGCATTCAATGTTGCTATTGTAAGAGGCAATGGTACTCGCAATAAAGCTCAAGGTAGTACTAAAACAACTCGCTCAAGCAGCAACAGAGAGGCAGGCATGTCCGAAGAGATGAAAGGCCTAAAAAGCAGAGAGGGTGGTAGTAAAAGGACAGTTGAAGTAAATATCAAAGAAGCTTCCTGCAAATTCATCTCCAAGCATCCTTTCTTCCAAATTGTTTTGAGTCCAACTTATGTGAGCAATGGCTTTCTGAATATTCCATCAAATTTCCGAAAGAGCTACATGAATCGACGTCGGGCAACTGCTACACTTCGACATTCAAATAAGTGGTGGGCGGTGAATGTGAAGGGTTATGGCAGCAGGGGATTTCATTTTTGTGGCGGTTGGAATAAATTTGTCAAGGAAAACAGTTTGCAAGTGGGAGATGTTTGCAGTTTTGAGATGATTGAGAAAGACAAGTATGTGTTCAAGGTGTCTATTGCTAGAGGTGTCAATAACAGCAATCCAAGTAAAGTTTGA

Network for GWHGAAZE007920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	5	78	3.30E-13
PF02362.22	B3	111	203	1.10E-14
PF02362.22	B3	262	352	7.90E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.063
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.242
	SRR3591711	White flower	0.214
	SRR3591712	Green floral bud	0.073
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.206
	SRR8316896	Juvenile bud stage	0.294
	SRR8316897	Juvenile bud stage	0.019
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.042
	SRR8316901	Third green stage	0.017
	SRR8316898	Complete white stage	0.157
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.069
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.004
	SRR6706288	Light intensity 20%	0.023
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.080
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.172
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.082
	CNS0095600	Silvery flower (diploied) 3	0.010
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.014
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.117
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.719
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.214
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.205
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.046
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.094
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.043
	CRR073298	Stem 2	0.036
	CRR073299	Stem 3	0.146
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.048
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000