Gene detail

Detail information of GWHGAAZE007923

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010052027.1	9.13695E-53	PREDICTED: B3 domain-containing transcription factor VRN1-like [Eucalyptus grandis]
Swissprot	tr\|Q9FGD2\|Y5698_ARATH	6E-22	Putative B3 domain-containing protein At5g66980
trEMBL	tr\|A0A059CCB4\|A0A059CCB4_EUCGR	2E-51	Uncharacterized protein {ECO:0000313\|EMBL:KCW75884.1}
TAIR10	AT5G66980.1	4E-20	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	56548333	56552747	-
GWHAAZE00000002	mRNA	56548333	56552747	-
GWHAAZE00000002	exon	56552643	56552747	-
GWHAAZE00000002	exon	56551182	56551500	-
GWHAAZE00000002	exon	56550746	56550912	-
GWHAAZE00000002	exon	56549822	56550086	-
GWHAAZE00000002	exon	56548760	56548914	-
GWHAAZE00000002	exon	56548333	56548599	-
GWHAAZE00000002	CDS	56552643	56552747	-
GWHAAZE00000002	CDS	56551182	56551500	-
GWHAAZE00000002	CDS	56550746	56550912	-
GWHAAZE00000002	CDS	56549822	56550086	-
GWHAAZE00000002	CDS	56548760	56548914	-
GWHAAZE00000002	CDS	56548333	56548599	-

Transcript Sequence
>GWHTAAZE007931 ATGGTGAAACCTAGCGGTAGAAATTGTTACTACTCTGACGATGAAAAGAGTAGTCCTCCTCAGTTCTTCAAAATATATACATCTCACAATTGCTCTCAAAGCCTGAGGATCCCACCAGCATTCATCAAGTATTTCAAGGGTGTTCCACCAACGAAGTCCATACTTAAGACTCCTGCTAAAACAACATGGTGCATTGATGTTAACAAGGTTGACAACTATTTCTTTTTTCAAAAGGGTTGGCCTGAATTTGTGCGAGATAATTCTTTAGAGTTCGGAGATTTTCTAATTTTCTGCTACATTGGTAACTCAGAATTCTATGTTCCTATATTTGGGAAAAATAACTGTCGAAAGGAGGTTCCCATTACTACTAGGGACAGTGACAAACCGCAGTCGGTTCTTCATGGGAATCCAACTGTTGAAGCTAGCAATTCCGAAGAGAAGACGTGCATAGATAGTACTGTAGAGATGGGTAACACTGGAATGCCAAGTCAAGAGCATATTGGAGATATTGGAACTCCATGTGAATTTGGCTCCAGGAAGCCATTCTTCGAGAATATTTTGAAACCAGCTTATGTTTATTCCAGGTCAATGCACATTCCAATGGAATTCGTGAAGGGCTACATGTCTGCATATAGAAAAACTGCTAGGCTTAAGCATTCAAATAAGTCATGGACAGTGAAGTTGATTCACTACGGAGAAAGACTTGTATTTTCTGCCGGGTGGTGCAAATTTGTCGCCGATAACACTCTGAAAGAAGGCGACGTTTGCAGGTTTGAGCTGATTCGAAGAAATGATTATGCTTATGCATTCAATGTTGCTATTGTAAGAGGCAATGGTACTCGCAATAAAGCTCAAGGCAAGTCCGAAGAGATGAAAGGCCTAAAAAGCAGAGAGGGAAGTAGTAAAAGGACAGTTAAAGTAAATATCAAAGAAGCTTCCTGCAAATTCATCTCCAAGCATCCTTTCTTCCAAATTGTTTTGAGTCCAACTTATGTGAGCAATGGCTTTCTGAATATTCCTTCAAATTTCCGAAAGAGCTACATGAATCGAGGTCGGGCAACTGCTACGCTTGGACATTCAAATAAGTGGTGGGCGGTGAATGTGAAGGGTTATGGCAGCAGGGGATTTCATTTTTGTGGCGGTTGGAATAAATTTGTGAAGGAAAACAGTTTGCAAGTGGGAGATGTTTGCAGTTTTGAGATGATTGAGAAGGACAAGTATGTGTTCAAGGTGTCTATTGCTAGAGGTGTCAATAACAGCAATCCAAGTAGAGTTTGA

Network for GWHGAAZE007923

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	22	112	7.90E-16
PF02362.22	B3	183	265	1.50E-15
PF02362.22	B3	322	412	3.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.061
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.258
	SRR3591709	Stem	0.074
	SRR3591710	White floral bud	0.164
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.037
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.523
	SRR8316896	Juvenile bud stage	5.553
	SRR8316897	Juvenile bud stage	0.711
	SRR8316894	Third green stage	2.534
	SRR8316900	Third green stage	6.478
	SRR8316901	Third green stage	6.683
	SRR8316898	Complete white stage	1.336
	SRR8316899	Complete white stage	7.335
	SRR8316903	Complete white stage	2.258
	SRR8316902	Silver flowering stage	1.730
	SRR8316904	Silver flowering stage	2.491
	SRR8316905	Silver flowering stage	1.163
	SRR8316906	Gold flowering stage	2.961
	SRR8316907	Gold flowering stage	3.377
	SRR8316908	Gold flowering stage	0.536
SRP132670	SRR6706286	Control	6.412
	SRR6706287	Light intensity 50%	6.269
	SRR6706288	Light intensity 20%	7.374
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.762
	CNS0095593	Slightly white alabastrum(diploid) 2	3.665
	CNS0095594	Slightly white alabastrum(diploid) 3	6.222
	CNS0095595	Whole white alabastrum(diploid) 2	3.897
	CNS0095596	Whole white alabastrum(diploid) 3	3.160
	CNS0095597	Whole white alabastrum(diploid) 4	2.813
	CNS0095598	Silvery flower (diploied) 1	4.234
	CNS0095599	Silvery flower (diploied) 2	2.037
	CNS0095600	Silvery flower (diploied) 3	2.546
	CNS0095601	Golden flower (diploid) 1	3.014
	CNS0095602	Golden flower (diploid) 2	2.476
	CNS0095603	Golden flower (diploid) 3	3.151
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.817
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.070
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.012
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.157
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.198
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.264
	CNS0095610	Silvery flower (tetraploid) 1	0.105
	CNS0095611	Silvery flower (tetraploid) 2	0.098
	CNS0095612	Silvery flower (tetraploid) 3	0.498
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.134
	CNS0095615	Golden flower (tetraploid) 3	0.014
CRA001975	CRR073297	Stem 1	3.178
	CRR073298	Stem 2	2.902
	CRR073299	Stem 3	2.325
	CRR073300	Leaf 1	3.175
	CRR073301	Leaf 2	2.455
	CRR073302	Leaf 3	1.049
	CRR073303	Juvenile bud 1	1.644
	CRR073304	Juvenile bud 2	0.518
	CRR073305	Juvenile bud 3	1.914
	CRR073306	Third green 1	0.403
	CRR073307	Third green 2	0.061
	CRR073308	Third green 3	0.268
	CRR073309	Second white 1	0.829
	CRR073310	Second white 2	0.269
	CRR073311	Second white 3	0.104
	CRR073312	Silver flowering 1	0.362
	CRR073313	Silver flowering 2	0.111
	CRR073314	Silver flowering 3	0.570
	CRR073315	Gold flowering 1	1.510
	CRR073316	Gold flowering 2	3.083
	CRR073317	Gold flowering 3	1.901
	CRR073318	Tawny withering 1	1.589
	CRR073319	Tawny withering 2	1.905
	CRR073320	Tawny withering 3	1.680