Detail information of GWHGAAZE007924


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010065667.11.58003E-49PREDICTED: B3 domain-containing protein REM13-like isoform X1 [Eucalyptus grandis]
Swissprottr|Q9FGD2|Y5698_ARATH4E-21Putative B3 domain-containing protein At5g66980
trEMBLtr|A0A059BBI7|A0A059BBI7_EUCGR7E-50Uncharacterized protein {ECO:0000313|EMBL:KCW63266.1}
TAIR10AT5G66980.13E-19AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5655958456565829-
GWHAAZE00000002mRNA5655958456565829-
GWHAAZE00000002exon5655958456559826-
GWHAAZE00000002exon5656119456561461-
GWHAAZE00000002exon5656161656561770-
GWHAAZE00000002exon5656275556563013-
GWHAAZE00000002exon5656347156563637-
GWHAAZE00000002exon5656390656564224-
GWHAAZE00000002exon5656572556565829-
GWHAAZE00000002CDS5656572556565829-
GWHAAZE00000002CDS5656390656564224-
GWHAAZE00000002CDS5656347156563637-
GWHAAZE00000002CDS5656275556563013-
GWHAAZE00000002CDS5656161656561770-
GWHAAZE00000002CDS5656119556561461-
GWHAAZE00000002three_prime_UTR5656119456561194-
GWHAAZE00000002three_prime_UTR5655958456559826-
Transcript Sequence

Network for GWHGAAZE007924

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B3221105.50E-15
PF02362.22B31832751.90E-15
PF02362.22B33204101.30E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.285
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.135
SRR3591709Stem0.341
SRR3591710White floral bud1.814
SRR3591711White flower0.674
SRR3591712Green floral bud0.364
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.397
SRR8316896Juvenile bud stage 1.721
SRR8316897Juvenile bud stage 0.709
SRR8316894Third green stage 0.612
SRR8316900Third green stage 0.915
SRR8316901Third green stage 1.687
SRR8316898Complete white stage 1.215
SRR8316899Complete white stage 3.611
SRR8316903Complete white stage 1.235
SRR8316902Silver flowering stage0.159
SRR8316904Silver flowering stage0.108
SRR8316905Silver flowering stage0.068
SRR8316906Gold flowering stage 0.064
SRR8316907Gold flowering stage 0.099
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.309
SRR6706287Light intensity 50%1.528
SRR6706288Light intensity 20%1.319
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.018
CNS0095593Slightly white alabastrum(diploid) 22.684
CNS0095594Slightly white alabastrum(diploid) 32.812
CNS0095595Whole white alabastrum(diploid) 21.354
CNS0095596Whole white alabastrum(diploid) 31.279
CNS0095597Whole white alabastrum(diploid) 41.449
CNS0095598Silvery flower (diploied) 14.098
CNS0095599Silvery flower (diploied) 23.644
CNS0095600Silvery flower (diploied) 30.723
CNS0095601Golden flower (diploid) 15.417
CNS0095602Golden flower (diploid) 21.659
CNS0095603Golden flower (diploid) 32.247
CNS0095604Slightly white alabastrum(tetraploid) 11.070
CNS0095605Slightly white alabastrum(tetraploid) 21.323
CNS0095606Slightly white alabastrum(tetraploid) 31.541
CNS0095607Whole white alabastrum(tetraploid) 10.548
CNS0095608Whole white alabastrum(tetraploid) 20.212
CNS0095609Whole white alabastrum(tetraploid) 30.481
CNS0095610Silvery flower (tetraploid) 10.405
CNS0095611Silvery flower (tetraploid) 20.410
CNS0095612Silvery flower (tetraploid) 30.070
CNS0095613Golden flower (tetraploid) 10.147
CNS0095614Golden flower (tetraploid) 20.016
CNS0095615Golden flower (tetraploid) 30.034
CRA001975CRR073297Stem 11.510
CRR073298Stem 21.348
CRR073299Stem 30.425
CRR073300Leaf 11.300
CRR073301Leaf 20.575
CRR073302Leaf 30.522
CRR073303Juvenile bud 10.607
CRR073304Juvenile bud 20.390
CRR073305Juvenile bud 30.522
CRR073306Third green 10.000
CRR073307Third green 20.071
CRR073308Third green 30.115
CRR073309Second white 10.051
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.027
CRR073317Gold flowering 30.014
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.034
CRR073320Tawny withering 30.000