Gene detail

Detail information of GWHGAAZE007934

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004237477.1	PREDICTED: brassinosteroid LRR receptor kinase [Solanum lycopersicum]
Swissprot	tr\|Q8GUQ5\|BRI1_SOLLC	Brassinosteroid LRR receptor kinase (Precursor)
trEMBL	tr\|A4LAP5\|A4LAP5_SOLPI	BRI1 protein {ECO:0000313\|EMBL:ABO27626.1}
TAIR10	AT4G39400.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	56787758	56790762	-
GWHAAZE00000002	mRNA	56787758	56790762	-
GWHAAZE00000002	exon	56787758	56790482	-
GWHAAZE00000002	exon	56790566	56790762	-
GWHAAZE00000002	CDS	56790566	56790762	-
GWHAAZE00000002	CDS	56787758	56790482	-

Transcript Sequence
>GWHTAAZE007942 ATGAAGATGAACGAGCTTTCCGGAGATCTTTCCTTGATGAACTGCAAGAGGTTGGACTATATAGATATCTCTTCCAACAATTTCTCGACCGAGTTTCCTTCATTTGGCAATTGTGAAGCTCTATCTCACCTCGATTTTTCGTCGAACAAGTTCCATGGTGACATTTCCGTTTCTATTTCTGCTTGTCGGAAACTGAGCAATGGTTTTCGCGGTTTAATGCCGCGTCTCGATGAATTATGTTTGAGTCTAGTTGAGCTAGACATTTCCCGGAACAGTTTGTATGGTACTCTTCCTGAAAGTCTCGGTTCGTGTTCTTCATTGCAGCTGTTTGATATTTCATCCAACAATTTCTCTGGTGAGTTGCCGGTTGATACCATTGTCAAGTTGAGTAGCTTGAAGACTTTAGCACTGTCATTCAACTACTTTGTTGGTTCTTTGGATATATCTTTCTCCAATTTGACCAATTTGGAGACTTTAGATTTGAGTTCGAACAATATTTCGGGTTCGATTCCATTGGGACTTTGTGATAATCCAAGGAACAGATTGAAAGTATTGTATCTTCAGAACAATATGCTCACAGGTCCAATACCAGAGACACTAAGCAATTGTTCACAAATGGTTTCTCTTGATCTAAGCTTTAATTACCTTACTGGGACAATCCCTTCAAGTTTAGGGTCATTATCCAATCTTCGTGATTTGGTAATTTGGTTGAATCAGCTCCATGGCGAAATCCCGGAGGAGTTCATGTACATTCAGGCTCTAGAGAATTTGATTCTTGATTTCAATGACTTGACAGGATCGATTCCGGGTAGCTTAAGCAATTGTACTAATTTGAATTGGATATCATTGTCGAATAACCAGTTGAGCGGTGAGATACCATCTTCGTTTGGTCGGTTGGAAAATCTAGCTATTCTTAAGCTCAGGAACAACTCATTTTCAGGGAAAATTCCGGCAGAGTTGGGGGATTGTCGTAGTTTGATATGGCTGGACTTAAATACTAATTTCTTGAATGGGACAATTCCACCGGCTTTGTTCAGACAATCGGGTAACATTGCAGTTGCTGTGGTGAATGGGAAGCGATTGTATATCAAAAACGACGGGAGCAAGGAATGCCACGGGGCAGGGAATTTGCTCGAATTTGGAGGAATCAGAGAGGAACAGCTGAGTAGAATCTCAACTAGGTTCCCCTGCAATTTCACTAGGGTGTACAGAGCCATCCCCCAAAAGTTCGACCACAATGGTTCGATGATTTTTCTTGATCTTTCGTACAATAAGTTGGAGGGTAACATTCCGAAAGAGCTTGGGTCCATGTATTATCTCTTCATATTGAATTTGGGCCATAATGATCTCACTGGTCCGATTCCTGAAGAACTTGGAAGTTTGAAGAATGTTGCGATTCTTGATCTTTCGTTTAACAGCCTCAATGGATCGATCCCACAGTCCTTAACTGGCCTTACGTCACTTGGTGAAATTGATCTGTCGAACAACAAATTATCCGGAATGATACCTGAATCTGCTCCATTTTATACATTTCCAGACTACAGATTCTTGAATAATTCAGGCCTTTGCGGGTTACCTCTTCCTCGTTGTGGGGGAGATTCGAGTAAGAGCTTGAATGGAGACCATAAGAAGTCTAAACGAAGACAAGCATCACTAGCAGGGAGTGTGGCGATGGGGTTGCTATTTTCCTTCTTTTGTATGGTCGGTTTGATAATAATCGCAGTAGAGACCAAGAAAAGGAGGAAGAAGAAAGAAGCGGCGCTTGATGCTTATATCGGTAGCAATTCTCATTCAGGTACGGCAAATAGTGTGTGGAAGCTACCCACAGCTCGAGAGGCACTAAGCATCAACCTCGAAACATTCGAAAAGCCACTCAAGAAGCTCACTTTTGCTGATCTTCTAGAAGCCACCAATGGCTTCCACGAGAACACCCTTGTGGGTTCTGGTGGATTTGGCGATGTATACCGAGCCCAATTGAAAGATGGAAGTGTCGTCGCAATAAAGAAACTGATACACATTAGCGGGCAAGGCGATCGAGAGTTCATGGCTGAAATGGAAACCATTGGGAAGATAAAGCACCGAAACCTCGTTCCCCTCTTCGGATACTGCAAGGTGGGTGAAGAACGGCTTTTGGTCTACAAGTACATGAAGTTCGGTAGCTTAGAAGACGTTTTGCACGACCGGAAAAAGATCGGGATTAAACTGAATTGGTCTGCTAGAAAGAAGATTGCAATGGGTGCCGCTAGGGGATTGGCTTTCCTTCACCATAATTGCACCCCACACATAATTCACCGCGATATGAAGTCAAGCAATGTCTTGTTGGACGAGAACCTTGAAGCCCGGGTCTCGGATTTCGGAATGGCAAGGTTTATGAGCGCAATGGACACGCACTTGAGCGTTAGCACGTTAGCCGGGACCCCCGGATACGTCCCACCAGAGTACTACCAAAGCTTTAGGTGCTCAACACGTGGTGACGTTTATAGTTATGGTGTGGTCTTGCTTGAGCTTTTGACTGGAAAACAACCAACTCATTCGGCAGATTTTGGCGACAATAATCTAGTGGGGTGGATGAAAACACACGCGAAAATGAAAATAAGTGACATTTTTGATACTGAGTTGATGAAAGAGGACCCAAGCTTAGAGGTCGAGCTTTTGCATCACTTAAAGGTAGCTTGCGCGTGTTTGGACGATCGGCCCTTTAAACGGCCCACGATGATTCAAGTGATGGCGATGCTCAAAGAGATCCAAGTGGGTATGGGTTTTGATCCATCGTCCACAGTTGATGAGGGAGGTTTTAGTGCTGTTGAAGGGGCGGAAATGAGCATAAAAGAAGGCAATGAGATGAGGAAGGGAAATTTTAGTGAAGTTGAAGGTTTAGAGATGAAAATGAAAGAGGACAATGAGTTGGGCGATAAGCAGTGA

Network for GWHGAAZE007934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	181	203	1.3
PF13855.7	LRR_8	253	311	4.30E-07
PF00069.26	Pkinase	640	910	1.30E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13415	BRI1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.668
	SRR3591706	second leaf	12.374
	SRR3591707	mature leaf	13.699
	SRR3591708	Shoot apex	17.737
	SRR3591709	Stem	5.473
	SRR3591710	White floral bud	23.921
	SRR3591711	White flower	17.238
	SRR3591712	Green floral bud	8.960
	SRR3591713	Yellow flower	12.079
SRP173429	SRR8316895	Juvenile bud stage	21.151
	SRR8316896	Juvenile bud stage	22.478
	SRR8316897	Juvenile bud stage	8.809
	SRR8316894	Third green stage	8.878
	SRR8316900	Third green stage	17.511
	SRR8316901	Third green stage	21.331
	SRR8316898	Complete white stage	16.263
	SRR8316899	Complete white stage	26.400
	SRR8316903	Complete white stage	28.301
	SRR8316902	Silver flowering stage	21.254
	SRR8316904	Silver flowering stage	34.921
	SRR8316905	Silver flowering stage	19.798
	SRR8316906	Gold flowering stage	62.903
	SRR8316907	Gold flowering stage	51.593
	SRR8316908	Gold flowering stage	47.833
SRP132670	SRR6706286	Control	17.271
	SRR6706287	Light intensity 50%	16.940
	SRR6706288	Light intensity 20%	17.151
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.393
	CNS0095593	Slightly white alabastrum(diploid) 2	14.087
	CNS0095594	Slightly white alabastrum(diploid) 3	9.607
	CNS0095595	Whole white alabastrum(diploid) 2	7.686
	CNS0095596	Whole white alabastrum(diploid) 3	6.773
	CNS0095597	Whole white alabastrum(diploid) 4	9.099
	CNS0095598	Silvery flower (diploied) 1	11.347
	CNS0095599	Silvery flower (diploied) 2	14.325
	CNS0095600	Silvery flower (diploied) 3	29.344
	CNS0095601	Golden flower (diploid) 1	11.756
	CNS0095602	Golden flower (diploid) 2	15.494
	CNS0095603	Golden flower (diploid) 3	14.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.189
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.595
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.385
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.852
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.679
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.470
	CNS0095610	Silvery flower (tetraploid) 1	22.461
	CNS0095611	Silvery flower (tetraploid) 2	24.931
	CNS0095612	Silvery flower (tetraploid) 3	80.493
	CNS0095613	Golden flower (tetraploid) 1	9.075
	CNS0095614	Golden flower (tetraploid) 2	11.557
	CNS0095615	Golden flower (tetraploid) 3	14.969
CRA001975	CRR073297	Stem 1	25.294
	CRR073298	Stem 2	22.035
	CRR073299	Stem 3	22.269
	CRR073300	Leaf 1	28.858
	CRR073301	Leaf 2	32.391
	CRR073302	Leaf 3	21.660
	CRR073303	Juvenile bud 1	28.709
	CRR073304	Juvenile bud 2	33.712
	CRR073305	Juvenile bud 3	49.042
	CRR073306	Third green 1	70.616
	CRR073307	Third green 2	47.227
	CRR073308	Third green 3	61.141
	CRR073309	Second white 1	52.417
	CRR073310	Second white 2	44.891
	CRR073311	Second white 3	41.239
	CRR073312	Silver flowering 1	15.159
	CRR073313	Silver flowering 2	13.286
	CRR073314	Silver flowering 3	10.902
	CRR073315	Gold flowering 1	6.316
	CRR073316	Gold flowering 2	6.850
	CRR073317	Gold flowering 3	6.793
	CRR073318	Tawny withering 1	1.651
	CRR073319	Tawny withering 2	1.290
	CRR073320	Tawny withering 3	1.686