Gene detail

Detail information of GWHGAAZE007939

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003632535.2	0	PREDICTED: probable serine/threonine-protein kinase At1g54610 [Vitis vinifera]
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	8E-137	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|F6H4C2\|F6H4C2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47133.1}
TAIR10	AT1G53050.1	8E-118	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	56875299	56890639	+
GWHAAZE00000002	mRNA	56875299	56890639	+
GWHAAZE00000002	exon	56875299	56875655	+
GWHAAZE00000002	exon	56876753	56876809	+
GWHAAZE00000002	exon	56879263	56879547	+
GWHAAZE00000002	exon	56881573	56881890	+
GWHAAZE00000002	exon	56883435	56883656	+
GWHAAZE00000002	exon	56884254	56884323	+
GWHAAZE00000002	exon	56885042	56885199	+
GWHAAZE00000002	exon	56885287	56885454	+
GWHAAZE00000002	exon	56886224	56886315	+
GWHAAZE00000002	exon	56888890	56888995	+
GWHAAZE00000002	exon	56890421	56890639	+
GWHAAZE00000002	CDS	56875299	56875655	+
GWHAAZE00000002	CDS	56876753	56876809	+
GWHAAZE00000002	CDS	56879263	56879547	+
GWHAAZE00000002	CDS	56881573	56881890	+
GWHAAZE00000002	CDS	56883435	56883656	+
GWHAAZE00000002	CDS	56884254	56884323	+
GWHAAZE00000002	CDS	56885042	56885199	+
GWHAAZE00000002	CDS	56885287	56885454	+
GWHAAZE00000002	CDS	56886224	56886315	+
GWHAAZE00000002	CDS	56888890	56888995	+
GWHAAZE00000002	CDS	56890421	56890639	+

Transcript Sequence
>GWHTAAZE007947 ATGGGGTGTGTTCAATCAAAAGGGTCACCATATTCTCCAATTGGGGGAGTAGTGAAGTTGAAATCGGATAATGGGTTTGTTAAAGGAGGCTATGGAGTGAAACCCATTGCTCAAAAACAGCCATTGAAATCGGACCCAGTTGAGGGGTCTGTTGTGGATGGTGAAAATGGTAAGGTTAGAGAAGATGAGAGTGGAGTTAATGGTGGTGGGAATGTTTCAATGAAAATTGTGGTTAAGAAGATTAGTGCAGACGAGGTGGTTGATGGATGGCCTAAGTGGCTTTTTGATAATATACCAAATGATGTTTTGGCTGGTTTGGTTCCTAAAAGTGCTGATTCTTATGATAAGCTTTCAAAGGCAGGGGAGTTGGGAATTGGGGATTTGAGAATCCGGGAGTGCCATCACTATAAAAAGGTAGGTCAGGGAACATATAGCAATGTGTACAAAGCTCGAGATAGAGACACTGGAAAGATTGTTGCATTAAAGAAGGTGCGATTCAACACGTCACAGCCAGAAAGTGTGAAGTTTATGGCGAGAGAGATCATCATACTGCAAAAGCTAGATCATCCTAATATTATTAAGCTTGAAGGACTTGCTACTTCGAGAATGCAATATAGTCTTTACTTGGTCTTTGATTTCATGCAATCGGACTTAACTAGAATTATCTCCTGTACAGAGGGCAGACTAACTGAGCCGCAGGTCAAGTGCTATATGCAACAGCTGCTCTCAGGTCTACAACACTGCCATGAAAGGGGAATTTTACATAGGGATATAAAAGGATCCAACTTGTTGATAGACAGAAATGGGATGCTAAAGATTGCTGATTTTGGGCTCGCAAATTTTTACGAACCTAAACAAAAGCTCCCTCTTACAAGTCGGGTTGTAACGCTCTGGTATAGAGCACCTGAGCTACTTTTAGGTTCCACATATTATGGAGTTGGCATCGATCTTTGGAGCGCTGGGTGCATTTTGGCAGAGATGTTCATGGGGAGGCCGATTATGCCCGGTAGGACAGAGGTTGAGCAACTTCACAGGATTTTCAAGCTTTGTGGTTCACCCTGCGAGGATTACTGGAAAAAAATAAGGCCACCAACAACTTTCCGACCACCACAACAATACAAACCCGGTTTTCAAGAAGCCTTTATGGATTTCCCTCCTCCTTCGTTTGGTCTCTTGACGACACTTTTAGCTCTTGACCCAGCCAACCGTAGCACCACTACATCTGCTCTAGAAACTGAACCTACAACTAAAGCCATTGGACTGAAGCTAGGTTTAGAACTAGGGAAATCAAGAAGAATGCGTCCCTTTTATTTTATCCTAAGTGATCCTCTGCCAAAAAACGGGAATTTGTTCAATAAATCCATTTCAATGCAAACCCTAGCCACATTAGGACTAGCAAGAGCAGCTATTGTGGCATCCATTTTCATAGGAGCTCTCCCAATGGAAAACAGACTTTATTTCGAGAAGGAGATTTCTTCAAGTACCACTGCTCATGAAGCCAGATTCTCTAATAATCTTCCTTGCTGTAGAAACACATTAGGATGTTCTTACGATCAAGCAATCCTACAAGAAACGCAGCCTTCAAACCAAAGGATTCCAAAGCAGATCAGATTTCTGCAATGGAAGGAAGACCATTTCTTTAGTTCAAGTCCATTAGCATGCGATCTTTCTGGTTTACCTACAATGAATAAAGAGGACATGCCAACTCAATCCAACAATCAAAAGAAGACTTCAAAGACAAAGCAACGGTCACAGAAAACTAAAAAAGGTCTTGCAAGCAAAGATTTGGTCACTGAAAGGACCAAAGAAGAAGAATCAGGTTCTTCTAAAGAGGAGAAGAAAAATGGAGAGCCTAGCTTACAAAACCAAGATATGGTTAACACTTCAAATGGCAATGCTGCTAGTGAAAAAATTACAAGTATGATACAAGAGAGCCCACCTCCTCCTCCTTCCCCATCTTTTTATTCAACCGGGAACATTATGCAAGAACAGAGGCTCATCCTAATGCCACGAAGAACGTCAAGAATTTCCCTCTCATACACGCTTGCATAA

Network for GWHGAAZE007939

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	135	411	5.40E-68

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.410
	SRR3591706	second leaf	1.370
	SRR3591707	mature leaf	1.138
	SRR3591708	Shoot apex	3.336
	SRR3591709	Stem	1.958
	SRR3591710	White floral bud	1.032
	SRR3591711	White flower	1.309
	SRR3591712	Green floral bud	2.049
	SRR3591713	Yellow flower	0.564
SRP173429	SRR8316895	Juvenile bud stage	1.763
	SRR8316896	Juvenile bud stage	2.311
	SRR8316897	Juvenile bud stage	1.277
	SRR8316894	Third green stage	0.639
	SRR8316900	Third green stage	2.363
	SRR8316901	Third green stage	1.541
	SRR8316898	Complete white stage	0.148
	SRR8316899	Complete white stage	1.856
	SRR8316903	Complete white stage	0.692
	SRR8316902	Silver flowering stage	0.419
	SRR8316904	Silver flowering stage	0.559
	SRR8316905	Silver flowering stage	0.331
	SRR8316906	Gold flowering stage	0.880
	SRR8316907	Gold flowering stage	0.850
	SRR8316908	Gold flowering stage	0.881
SRP132670	SRR6706286	Control	1.410
	SRR6706287	Light intensity 50%	1.324
	SRR6706288	Light intensity 20%	1.047
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.856
	CNS0095593	Slightly white alabastrum(diploid) 2	1.384
	CNS0095594	Slightly white alabastrum(diploid) 3	1.133
	CNS0095595	Whole white alabastrum(diploid) 2	0.835
	CNS0095596	Whole white alabastrum(diploid) 3	1.157
	CNS0095597	Whole white alabastrum(diploid) 4	0.941
	CNS0095598	Silvery flower (diploied) 1	0.958
	CNS0095599	Silvery flower (diploied) 2	0.846
	CNS0095600	Silvery flower (diploied) 3	0.790
	CNS0095601	Golden flower (diploid) 1	0.535
	CNS0095602	Golden flower (diploid) 2	0.704
	CNS0095603	Golden flower (diploid) 3	0.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.092
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.809
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.312
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.375
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.542
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.070
	CNS0095610	Silvery flower (tetraploid) 1	0.578
	CNS0095611	Silvery flower (tetraploid) 2	0.553
	CNS0095612	Silvery flower (tetraploid) 3	1.882
	CNS0095613	Golden flower (tetraploid) 1	0.222
	CNS0095614	Golden flower (tetraploid) 2	0.242
	CNS0095615	Golden flower (tetraploid) 3	0.345
CRA001975	CRR073297	Stem 1	1.522
	CRR073298	Stem 2	1.231
	CRR073299	Stem 3	0.680
	CRR073300	Leaf 1	1.355
	CRR073301	Leaf 2	1.645
	CRR073302	Leaf 3	0.620
	CRR073303	Juvenile bud 1	0.330
	CRR073304	Juvenile bud 2	0.069
	CRR073305	Juvenile bud 3	0.703
	CRR073306	Third green 1	1.433
	CRR073307	Third green 2	0.799
	CRR073308	Third green 3	1.402
	CRR073309	Second white 1	0.210
	CRR073310	Second white 2	0.250
	CRR073311	Second white 3	0.357
	CRR073312	Silver flowering 1	0.086
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.318
	CRR073315	Gold flowering 1	0.145
	CRR073316	Gold flowering 2	0.213
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.427
	CRR073319	Tawny withering 2	0.636
	CRR073320	Tawny withering 3	0.392