Gene detail

Detail information of GWHGAAZE007952

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010260983.1	2.0445E-135	PREDICTED: WD repeat domain-containing protein 83 [Nelumbo nucifera]
Swissprot	tr\|Q6S7B0\|TAF5_ARATH	2E-22	Transcription initiation factor TFIID subunit 5
trEMBL	tr\|A0A022Q7Y9\|A0A022Q7Y9_ERYGU	1E-135	Uncharacterized protein {ECO:0000313\|EMBL:EYU24066.1}
TAIR10	AT5G64730.1	1E-97	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	57578221	57587008	+
GWHAAZE00000002	mRNA	57578221	57587008	+
GWHAAZE00000002	exon	57578221	57578432	+
GWHAAZE00000002	exon	57581140	57581299	+
GWHAAZE00000002	exon	57582955	57583076	+
GWHAAZE00000002	exon	57583370	57583415	+
GWHAAZE00000002	exon	57584304	57584435	+
GWHAAZE00000002	exon	57586925	57587008	+
GWHAAZE00000002	CDS	57578221	57578432	+
GWHAAZE00000002	CDS	57581140	57581299	+
GWHAAZE00000002	CDS	57582955	57583076	+
GWHAAZE00000002	CDS	57583370	57583415	+
GWHAAZE00000002	CDS	57584304	57584435	+
GWHAAZE00000002	CDS	57586925	57587008	+

Transcript Sequence
>GWHTAAZE007960 ATGAGCGTAGCAAGGGATTTGCCGACGAAGGAGGCTAACGTGCTCAAGGGGCACGAGGGTGCAGTTTTAGCAGCTAGGTTCAACGCAGACGGTAATTATTGCCTGAGCTGCGGCAAAGATCGTACCATACGCCTCTGGAATCCCCACCGTGGGATTCATATCAAGACCTACAAATCCCACGGCCGTGAAGTCCGCGATGTCCACGTCACTCCGGATAACTCCAAGCTGAGTTCTTGTGGTGGTGATCGACAAGTCTTTTACTGGGATGTAGCAACTGGTCGAAGTTATTCAAGTTTAAGTGGTCACGACAGTGAGGTTTGTGAAAGTTCATATTATAGTCTTCATTTGCTAATCTTATTAGGAGCAATGCATACCATTGACACATTTTTGGATAGTGTAATGTCTGTTTGTTTAACAAAAACCGAGATTATTGCGGGAAGTGTTGATGGAACCGTTCGAACATTTGACATTCGAATTGGTAGGTACGTTGCGCGATCTGCTGGCGAGTTATTGCAAGAATACAAGGGCCATACTTGCAAGTCATTCAAAATGGATTGCTGCTTGACGAACAATGATGCACATGTAGCTGGTGGATCTGAAGATGGCTCTGTTTTCTTCTGGGATTTGGTTGATGCATCTGTTGTCTCCAGTTTTCGTGCTCACGATTCAGTGGTAACAAGTGTGAGTTATCACCCAAAGGACAGCTGCATGATAACTGCTTCTGTAGATGGAACTGTTAGGGTTTGGAAAACCTGA

Network for GWHGAAZE007952

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	14	47	9.10E-07
PF00400.33	WD40	53	89	0.0025
PF00400.33	WD40	168	208	0.0016
PF00400.33	WD40	215	250	1.20E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.689
	SRR3591706	second leaf	8.077
	SRR3591707	mature leaf	7.567
	SRR3591708	Shoot apex	11.485
	SRR3591709	Stem	8.420
	SRR3591710	White floral bud	9.136
	SRR3591711	White flower	9.004
	SRR3591712	Green floral bud	9.948
	SRR3591713	Yellow flower	6.488
SRP173429	SRR8316895	Juvenile bud stage	4.020
	SRR8316896	Juvenile bud stage	5.072
	SRR8316897	Juvenile bud stage	5.560
	SRR8316894	Third green stage	1.533
	SRR8316900	Third green stage	5.971
	SRR8316901	Third green stage	4.643
	SRR8316898	Complete white stage	3.382
	SRR8316899	Complete white stage	8.597
	SRR8316903	Complete white stage	3.385
	SRR8316902	Silver flowering stage	1.653
	SRR8316904	Silver flowering stage	2.691
	SRR8316905	Silver flowering stage	0.850
	SRR8316906	Gold flowering stage	4.951
	SRR8316907	Gold flowering stage	5.545
	SRR8316908	Gold flowering stage	8.178
SRP132670	SRR6706286	Control	3.582
	SRR6706287	Light intensity 50%	2.870
	SRR6706288	Light intensity 20%	3.982
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.581
	CNS0095593	Slightly white alabastrum(diploid) 2	3.274
	CNS0095594	Slightly white alabastrum(diploid) 3	3.770
	CNS0095595	Whole white alabastrum(diploid) 2	5.141
	CNS0095596	Whole white alabastrum(diploid) 3	3.702
	CNS0095597	Whole white alabastrum(diploid) 4	3.277
	CNS0095598	Silvery flower (diploied) 1	5.025
	CNS0095599	Silvery flower (diploied) 2	4.893
	CNS0095600	Silvery flower (diploied) 3	2.519
	CNS0095601	Golden flower (diploid) 1	3.285
	CNS0095602	Golden flower (diploid) 2	2.954
	CNS0095603	Golden flower (diploid) 3	4.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.325
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.080
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.070
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.154
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.787
	CNS0095610	Silvery flower (tetraploid) 1	4.541
	CNS0095611	Silvery flower (tetraploid) 2	5.237
	CNS0095612	Silvery flower (tetraploid) 3	11.948
	CNS0095613	Golden flower (tetraploid) 1	3.597
	CNS0095614	Golden flower (tetraploid) 2	3.454
	CNS0095615	Golden flower (tetraploid) 3	4.501
CRA001975	CRR073297	Stem 1	3.025
	CRR073298	Stem 2	3.217
	CRR073299	Stem 3	3.854
	CRR073300	Leaf 1	5.329
	CRR073301	Leaf 2	3.633
	CRR073302	Leaf 3	2.557
	CRR073303	Juvenile bud 1	3.323
	CRR073304	Juvenile bud 2	2.776
	CRR073305	Juvenile bud 3	4.079
	CRR073306	Third green 1	5.413
	CRR073307	Third green 2	5.291
	CRR073308	Third green 3	4.106
	CRR073309	Second white 1	4.453
	CRR073310	Second white 2	4.413
	CRR073311	Second white 3	2.229
	CRR073312	Silver flowering 1	2.666
	CRR073313	Silver flowering 2	3.933
	CRR073314	Silver flowering 3	1.858
	CRR073315	Gold flowering 1	2.882
	CRR073316	Gold flowering 2	4.556
	CRR073317	Gold flowering 3	0.607
	CRR073318	Tawny withering 1	2.131
	CRR073319	Tawny withering 2	0.662
	CRR073320	Tawny withering 3	4.041