Detail information of GWHGAAZE007962


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003531399.11.59166E-60PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Glycine max]
Swissprottr|F4KFC7|MD26C_ARATH8E-51Probable mediator of RNA polymerase II transcription subunit 26c
trEMBLtr|I1KTE5|I1KTE5_SOYBN6E-61Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15430.1}
TAIR10AT5G09850.15E-40Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5780119457802783-
GWHAAZE00000002mRNA5780119457802783-
GWHAAZE00000002exon5780119457801304-
GWHAAZE00000002exon5780140957801477-
GWHAAZE00000002exon5780243657802783-
GWHAAZE00000002CDS5780243657802783-
GWHAAZE00000002CDS5780140957801477-
GWHAAZE00000002CDS5780119457801304-
Transcript Sequence

Network for GWHGAAZE007962

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08711.12Med261241662.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyIWS1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.520
SRR3591706second leaf12.479
SRR3591707mature leaf22.456
SRR3591708Shoot apex12.610
SRR3591709Stem26.420
SRR3591710White floral bud43.270
SRR3591711White flower28.685
SRR3591712Green floral bud40.756
SRR3591713Yellow flower40.626
SRP173429 SRR8316895Juvenile bud stage 14.995
SRR8316896Juvenile bud stage 22.555
SRR8316897Juvenile bud stage 10.428
SRR8316894Third green stage 12.714
SRR8316900Third green stage 32.585
SRR8316901Third green stage 31.486
SRR8316898Complete white stage 16.254
SRR8316899Complete white stage 53.187
SRR8316903Complete white stage 25.413
SRR8316902Silver flowering stage13.492
SRR8316904Silver flowering stage24.026
SRR8316905Silver flowering stage9.296
SRR8316906Gold flowering stage 36.943
SRR8316907Gold flowering stage 32.825
SRR8316908Gold flowering stage 39.626
SRP132670SRR6706286Control48.278
SRR6706287Light intensity 50%43.340
SRR6706288Light intensity 20%47.480
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.238
CNS0095593Slightly white alabastrum(diploid) 217.875
CNS0095594Slightly white alabastrum(diploid) 39.279
CNS0095595Whole white alabastrum(diploid) 215.660
CNS0095596Whole white alabastrum(diploid) 317.376
CNS0095597Whole white alabastrum(diploid) 413.634
CNS0095598Silvery flower (diploied) 124.162
CNS0095599Silvery flower (diploied) 216.093
CNS0095600Silvery flower (diploied) 335.505
CNS0095601Golden flower (diploid) 115.785
CNS0095602Golden flower (diploid) 234.785
CNS0095603Golden flower (diploid) 332.399
CNS0095604Slightly white alabastrum(tetraploid) 127.046
CNS0095605Slightly white alabastrum(tetraploid) 217.437
CNS0095606Slightly white alabastrum(tetraploid) 337.272
CNS0095607Whole white alabastrum(tetraploid) 113.007
CNS0095608Whole white alabastrum(tetraploid) 27.689
CNS0095609Whole white alabastrum(tetraploid) 333.322
CNS0095610Silvery flower (tetraploid) 135.175
CNS0095611Silvery flower (tetraploid) 242.173
CNS0095612Silvery flower (tetraploid) 339.288
CNS0095613Golden flower (tetraploid) 125.363
CNS0095614Golden flower (tetraploid) 231.277
CNS0095615Golden flower (tetraploid) 342.133
CRA001975CRR073297Stem 133.569
CRR073298Stem 235.540
CRR073299Stem 330.506
CRR073300Leaf 146.830
CRR073301Leaf 237.611
CRR073302Leaf 338.209
CRR073303Juvenile bud 139.638
CRR073304Juvenile bud 238.386
CRR073305Juvenile bud 327.445
CRR073306Third green 133.200
CRR073307Third green 226.142
CRR073308Third green 325.262
CRR073309Second white 121.570
CRR073310Second white 227.623
CRR073311Second white 322.646
CRR073312Silver flowering 116.995
CRR073313Silver flowering 212.447
CRR073314Silver flowering 315.223
CRR073315Gold flowering 129.436
CRR073316Gold flowering 224.557
CRR073317Gold flowering 316.183
CRR073318Tawny withering 125.100
CRR073319Tawny withering 227.557
CRR073320Tawny withering 326.779