Gene detail

Detail information of GWHGAAZE007972

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009800501.1	0	PREDICTED: 2-isopropylmalate synthase A [Nicotiana sylvestris]
Swissprot	tr\|O04973\|LEU1A_SOLPN	0	2-isopropylmalate synthase A
trEMBL	tr\|K4CJ46\|K4CJ46_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc08g014130.2.1}
TAIR10	AT1G74040.1	9E-148	2-isopropylmalate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	58287127	58295909	-
GWHAAZE00000002	mRNA	58287127	58295909	-
GWHAAZE00000002	exon	58295377	58295909	-
GWHAAZE00000002	exon	58295027	58295240	-
GWHAAZE00000002	exon	58293045	58293125	-
GWHAAZE00000002	exon	58292625	58292717	-
GWHAAZE00000002	exon	58292341	58292427	-
GWHAAZE00000002	exon	58291895	58291972	-
GWHAAZE00000002	exon	58289341	58289430	-
GWHAAZE00000002	exon	58288823	58288957	-
GWHAAZE00000002	exon	58288187	58288308	-
GWHAAZE00000002	exon	58287127	58287226	-
GWHAAZE00000002	CDS	58295377	58295909	-
GWHAAZE00000002	CDS	58295027	58295240	-
GWHAAZE00000002	CDS	58293045	58293125	-
GWHAAZE00000002	CDS	58292625	58292717	-
GWHAAZE00000002	CDS	58292341	58292427	-
GWHAAZE00000002	CDS	58291895	58291972	-
GWHAAZE00000002	CDS	58289341	58289430	-
GWHAAZE00000002	CDS	58288823	58288957	-
GWHAAZE00000002	CDS	58288187	58288308	-
GWHAAZE00000002	CDS	58287127	58287226	-

Transcript Sequence
>GWHTAAZE007980 ATGAAGGCGATTACAACGTATTGTTGCACGTTCAACCATCAACCTCTTTATGTTCCAAACAAATTATTGAACGAGTCGTATGTTAGGGTTCTTGACAGTACCCTCCGAGATGGAGAGCAAGCCCCCGGGGCTACCATGACCCCAAGTCAAAAGCTAGCCATTGCCCACCAGCTGGCAAAACTCGGGGTTGACATTATAGAAGCCGGCTTCCCAGTATCATCACCTTCTGAATTTAAAACAACACGAATGATCGCAATGGAGGTTGGTAACACTGTTAATGACAAGACTGGCCGTGTACCTGTCATTGCTGGACTGTCAAGGCTGACACGCAAAGATATTGATGTGACATGGGAGGCTCTAAAGGGCGCGAAGTACCCGCGGCTGTTGACATTTATTCCATCAAGTGAGATTCACATGAAGTATAAGATAAAAAAGTCAAAGGAAGAGGTTTTGAGGAGTGTCAAGGAGTTGGTAAGTTATGCTAGAGGGTTGGGTATTATGGATATTGAGTTCGGCACGGAAGACTCTTCAAGGTCTGAAAAAGAGTTCTTATATCAAGTCTTTGAGGAAGCCATAAAAGCTGGGGCAACCACTATCGCTTTCGCCGACACTGTGGGATGTATGCTTCCAAATGAATGGGGCCAATTTATAGCTGATATGAAGGCAAATATTGTTGGGGTGGAAAATGTAATTATAGCAACTCATTGCCATGATGATCTTGGGGTTGCCACTGCAAATACATTAGCAGCTGTAAATGCAGGTGCTAGGGAAGTACATGTGACTATAAATGGCATTGGTGAAAGAGCTGGAAATGCTCCATTGGAAGAGTTTGTTATGGCTCTAAAGTCACGAGGAAAAGATCTCGCAGGTGGTCTGCACACCGGAATCAATTCTAGACATATTTTAAAATCTAGTAAGATGGTGGAAGAGCACAGTGGATTGTCAGTTCAACCAAATAAAGCCATAGTTGGAGCTAATGCCTTCTCTCATGGAAGTGGAATCCACCAGGATGGAATACTTAAAAATAGAACTACATACGAGTTTCTTTCCGGGAAGAAATTGGTTGGTCTCCCTCAGCTCATAATGACTCTTTCGGATAATGATTTGGTACTGTTGATGAGCGATGGTGATAAAACATTTCAACCAGAAGTGACTTGGAAGCTGGTTGACATGGAGGTTACAAGCAGCACTAATAGTCTCTCAAGGGCAACAATTAAACTAATTGATGCTTGTGGAAAAGAACATGTTGCTTGTGGAGTTGGGACAAACTCAATCCATGCAACTTGCAAAGCAATTGATGACATTGTTCAGGTTCCTGTAAAAATCGTTGAGTACGATATGAAGTTGGGGGCTGAAGGCCTGGAGGGAGTAGCATCCATAAGGGTTGTAGTAAGCAAAGAACACAATTCAGTTACAGGTCCACAAATTATAAGTGGGAGTGGTGGAGGACTGGATATGACTATGGCTACTGCTCGAGCTTATATGAATGCACTAAACAAGCTGTTGGCTCTTAGAAGACAAGCCCAAATTTAA

Network for GWHGAAZE007972

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00682.20	HMGL-like	28	308	3.80E-87
PF08502.11	LeuA_dimer	364	502	2.20E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01649	leuA, IMS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Pyruvate metabolism	map00620
		Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0009098	biological_process	leucine biosynthetic process
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0003824	molecular_function	catalytic activity
GO:0003852	molecular_function	2-isopropylmalate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.280
	SRR3591706	second leaf	34.420
	SRR3591707	mature leaf	17.396
	SRR3591708	Shoot apex	3.421
	SRR3591709	Stem	0.148
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.018
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.012
	SRR8316897	Juvenile bud stage	0.060
	SRR8316894	Third green stage	0.040
	SRR8316900	Third green stage	0.054
	SRR8316901	Third green stage	0.089
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.004
	SRR6706288	Light intensity 20%	0.038
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.037
	CNS0095593	Slightly white alabastrum(diploid) 2	0.044
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.093
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.023
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.029
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.025
	CRR073298	Stem 2	0.054
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.091
	CRR073301	Leaf 2	0.057
	CRR073302	Leaf 3	0.327
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.130
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000