Detail information of GWHGAAZE007995


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003531399.11.59166E-60PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Glycine max]
Swissprottr|F4KFC7|MD26C_ARATH8E-51Probable mediator of RNA polymerase II transcription subunit 26c
trEMBLtr|I1KTE5|I1KTE5_SOYBN6E-61Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15430.1}
TAIR10AT5G09850.15E-40Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5887238258874250+
GWHAAZE00000002mRNA5887238258874250+
GWHAAZE00000002exon5887238258872729+
GWHAAZE00000002exon5887396758874035+
GWHAAZE00000002exon5887414058874250+
GWHAAZE00000002CDS5887238258872729+
GWHAAZE00000002CDS5887396758874035+
GWHAAZE00000002CDS5887414058874250+
Transcript Sequence

Network for GWHGAAZE007995

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08711.12Med261241662.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyIWS1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.250
SRR3591706second leaf21.515
SRR3591707mature leaf13.364
SRR3591708Shoot apex28.985
SRR3591709Stem30.417
SRR3591710White floral bud23.696
SRR3591711White flower31.775
SRR3591712Green floral bud26.223
SRR3591713Yellow flower37.160
SRP173429 SRR8316895Juvenile bud stage 25.909
SRR8316896Juvenile bud stage 24.678
SRR8316897Juvenile bud stage 13.434
SRR8316894Third green stage 13.996
SRR8316900Third green stage 33.159
SRR8316901Third green stage 30.649
SRR8316898Complete white stage 17.864
SRR8316899Complete white stage 54.001
SRR8316903Complete white stage 27.493
SRR8316902Silver flowering stage12.918
SRR8316904Silver flowering stage24.746
SRR8316905Silver flowering stage9.676
SRR8316906Gold flowering stage 37.098
SRR8316907Gold flowering stage 25.847
SRR8316908Gold flowering stage 32.339
SRP132670SRR6706286Control47.549
SRR6706287Light intensity 50%45.707
SRR6706288Light intensity 20%49.318
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.542
CNS0095593Slightly white alabastrum(diploid) 215.148
CNS0095594Slightly white alabastrum(diploid) 316.404
CNS0095595Whole white alabastrum(diploid) 219.308
CNS0095596Whole white alabastrum(diploid) 315.976
CNS0095597Whole white alabastrum(diploid) 413.799
CNS0095598Silvery flower (diploied) 121.376
CNS0095599Silvery flower (diploied) 215.211
CNS0095600Silvery flower (diploied) 333.962
CNS0095601Golden flower (diploid) 115.865
CNS0095602Golden flower (diploid) 233.033
CNS0095603Golden flower (diploid) 329.501
CNS0095604Slightly white alabastrum(tetraploid) 123.050
CNS0095605Slightly white alabastrum(tetraploid) 214.797
CNS0095606Slightly white alabastrum(tetraploid) 334.378
CNS0095607Whole white alabastrum(tetraploid) 111.273
CNS0095608Whole white alabastrum(tetraploid) 215.704
CNS0095609Whole white alabastrum(tetraploid) 322.150
CNS0095610Silvery flower (tetraploid) 135.489
CNS0095611Silvery flower (tetraploid) 235.960
CNS0095612Silvery flower (tetraploid) 334.953
CNS0095613Golden flower (tetraploid) 124.655
CNS0095614Golden flower (tetraploid) 230.967
CNS0095615Golden flower (tetraploid) 340.262
CRA001975CRR073297Stem 130.674
CRR073298Stem 235.055
CRR073299Stem 326.044
CRR073300Leaf 141.265
CRR073301Leaf 238.873
CRR073302Leaf 331.927
CRR073303Juvenile bud 132.356
CRR073304Juvenile bud 228.346
CRR073305Juvenile bud 326.080
CRR073306Third green 121.135
CRR073307Third green 226.608
CRR073308Third green 320.060
CRR073309Second white 120.228
CRR073310Second white 229.082
CRR073311Second white 325.076
CRR073312Silver flowering 118.850
CRR073313Silver flowering 214.197
CRR073314Silver flowering 313.679
CRR073315Gold flowering 113.495
CRR073316Gold flowering 225.588
CRR073317Gold flowering 316.653
CRR073318Tawny withering 125.478
CRR073319Tawny withering 225.502
CRR073320Tawny withering 330.948