Detail information of GWHGAAZE008005


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002298710.10actin family protein [Populus trichocarpa]
Swissprottr|P53492|ACT7_ARATH0Actin-7
trEMBLtr|U5NGD2|U5NGD2_9ERIC0Actin {ECO:0000313|EMBL:AGY29620.1}
TAIR10AT5G09810.10actin 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5920660059208671+
GWHAAZE00000002mRNA5920660059208671+
GWHAAZE00000002exon5920660059206659+
GWHAAZE00000002exon5920675559207148+
GWHAAZE00000002exon5920749959208034+
GWHAAZE00000002exon5920860659208671+
GWHAAZE00000002CDS5920660059206659+
GWHAAZE00000002CDS5920675559207148+
GWHAAZE00000002CDS5920749959208034+
GWHAAZE00000002CDS5920860659208671+
Transcript Sequence

Network for GWHGAAZE008005

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0200


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00022.20Actin53315.10E-119
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf971.215
SRR3591706second leaf455.095
SRR3591707mature leaf172.007
SRR3591708Shoot apex661.949
SRR3591709Stem526.485
SRR3591710White floral bud551.022
SRR3591711White flower390.464
SRR3591712Green floral bud618.326
SRR3591713Yellow flower364.131
SRP173429 SRR8316895Juvenile bud stage 323.498
SRR8316896Juvenile bud stage 375.773
SRR8316897Juvenile bud stage 205.559
SRR8316894Third green stage 197.907
SRR8316900Third green stage 694.842
SRR8316901Third green stage 625.078
SRR8316898Complete white stage 340.091
SRR8316899Complete white stage 778.956
SRR8316903Complete white stage 565.106
SRR8316902Silver flowering stage255.303
SRR8316904Silver flowering stage319.818
SRR8316905Silver flowering stage144.330
SRR8316906Gold flowering stage 359.320
SRR8316907Gold flowering stage 364.260
SRR8316908Gold flowering stage 363.294
SRP132670SRR6706286Control701.006
SRR6706287Light intensity 50%764.737
SRR6706288Light intensity 20%853.329
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1306.162
CNS0095593Slightly white alabastrum(diploid) 2401.731
CNS0095594Slightly white alabastrum(diploid) 3251.850
CNS0095595Whole white alabastrum(diploid) 2314.001
CNS0095596Whole white alabastrum(diploid) 3341.400
CNS0095597Whole white alabastrum(diploid) 4269.089
CNS0095598Silvery flower (diploied) 1258.667
CNS0095599Silvery flower (diploied) 2207.829
CNS0095600Silvery flower (diploied) 3476.005
CNS0095601Golden flower (diploid) 1178.596
CNS0095602Golden flower (diploid) 2413.151
CNS0095603Golden flower (diploid) 3400.282
CNS0095604Slightly white alabastrum(tetraploid) 1437.695
CNS0095605Slightly white alabastrum(tetraploid) 2324.005
CNS0095606Slightly white alabastrum(tetraploid) 3992.186
CNS0095607Whole white alabastrum(tetraploid) 1223.152
CNS0095608Whole white alabastrum(tetraploid) 2193.307
CNS0095609Whole white alabastrum(tetraploid) 3643.309
CNS0095610Silvery flower (tetraploid) 1391.050
CNS0095611Silvery flower (tetraploid) 2382.711
CNS0095612Silvery flower (tetraploid) 3507.403
CNS0095613Golden flower (tetraploid) 1263.995
CNS0095614Golden flower (tetraploid) 2386.908
CNS0095615Golden flower (tetraploid) 3308.358
CRA001975CRR073297Stem 1979.056
CRR073298Stem 2984.664
CRR073299Stem 31254.297
CRR073300Leaf 11305.714
CRR073301Leaf 21334.646
CRR073302Leaf 31611.776
CRR073303Juvenile bud 11656.262
CRR073304Juvenile bud 21599.631
CRR073305Juvenile bud 31770.894
CRR073306Third green 11339.002
CRR073307Third green 21418.557
CRR073308Third green 31322.280
CRR073309Second white 1883.107
CRR073310Second white 2704.295
CRR073311Second white 3695.581
CRR073312Silver flowering 1785.950
CRR073313Silver flowering 2889.276
CRR073314Silver flowering 3773.672
CRR073315Gold flowering 1432.002
CRR073316Gold flowering 2489.879
CRR073317Gold flowering 3535.993
CRR073318Tawny withering 11412.299
CRR073319Tawny withering 2882.454
CRR073320Tawny withering 31645.355