Gene detail

Detail information of GWHGAAZE008009

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12782.1	3.1465E-179	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UWX1\|A0A068UWX1_COFCA	1E-179	Coffea canephora DH200=94 genomic scaffold, scaffold_71 {ECO:0000313\|EMBL:CDP12782.1}
TAIR10	AT3G18770.1	1E-88	Autophagy-related protein 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	59330432	59342895	+
GWHAAZE00000002	mRNA	59330432	59342895	+
GWHAAZE00000002	exon	59330432	59330579	+
GWHAAZE00000002	exon	59333111	59334453	+
GWHAAZE00000002	exon	59334749	59334923	+
GWHAAZE00000002	exon	59336212	59336390	+
GWHAAZE00000002	exon	59337103	59337139	+
GWHAAZE00000002	exon	59337584	59337743	+
GWHAAZE00000002	exon	59342424	59342895	+
GWHAAZE00000002	CDS	59330432	59330579	+
GWHAAZE00000002	CDS	59333111	59334453	+
GWHAAZE00000002	CDS	59334749	59334923	+
GWHAAZE00000002	CDS	59336212	59336390	+
GWHAAZE00000002	CDS	59337103	59337139	+
GWHAAZE00000002	CDS	59337584	59337743	+
GWHAAZE00000002	CDS	59342424	59342781	+
GWHAAZE00000002	three_prime_UTR	59342782	59342895	+

Transcript Sequence
>GWHTAAZE008017 ATGATGGCTTGTTGGTTCGCTATTTGTTCCACTGTGAATTCCGCATGTGATATTGCAGAGGCTTTCTTTGGTGCCATTGCAGTGGATGGCGTGTTGTTAAAGTTAGGATTTCGAAAACTTTCATTCCCTCGGATGACACCAAGTTGTTTTATGGCATCACATCATGGTAATACTCCCTCAGAACCAGCTAAAATGGAACAAATAATCACCGAATTCTTTGCGAAGAGCCTTCACATAGTACTCGAATCGAGGTGTCCTTATGTGTCATCGCGCCATTATAGCGGGGAGCAAATTATGTCGTCCCCGTCTTCATCGACGTCGTCCTCATCGAGTATAAGGCCGAGGGACAAGTGGTTCAACCTGGCACTTCGTGATTGCTCCGTTGTGCTTGAGAAGATTGACTTTTCGAGGCATAGTTACGTTGAACCTTTGGTGGTTGATGTGATTTTAGTGCAAAGACCTAGTAATTGGGATCCTTTGAATTTTTCCCCTAAAAGGGGACTTGTTCGGAATTTGTCAAAAGATCGATTTCCCCATTCGTGGAATTCGGAGATTGATGAATTCGGATACGAAGCTAAGGGTGAGAAGATTATTGAGAGATGGTTTGTTCAATATGAGACCCGAAAGAGTGGTAAAGATTGTGGTTCTGTGAGTAAGAGGTCGAATAGCACCAGTTCACATGTGTTGTATAAGAAATCTGTATTACTTTTGAGGTCTTTATATGCAACCGTGAGACTTTTGCCTGCTTATAAGCTCTTTCGTGACCTCAATTCTTCTGGTCAGATCCGGGAATTTAACCTTGCTCATCGGGTTTCTACCTTTGCTGAACCGTTCACTCGTAGAGAAGAGGCCGAAATGCAACGGTTTGCTTTCACCCCAGTGGACACTGCCTGTGGTAGGCTTAGCATTTCTGTCTTGTATAGTTCTTCACTGTATGACTCAAATTCTGAACCAACAACCCCTATGTCCCCTCGATTTATACCCGATTATGTTGGGAGTCCAATGGCGGATCGGCTTAAGAGGTTCCCATCGATTCCAGTACTTCAGTCCTCTCCACCGCCCGATCTATTTGGAAGGCGCCATAGCTGGAGTTACGATATATATAGAGCCTCACCACCCTCTGCAATTCCTTCACCTTCGCCAACGTATTCAGATTCGCGTGCACAATTTTCTAAACAGAGTTGCCATAATCTCCCTCCTACAAGTTTGCCTCGGCATCTTTCTAAGCGTACAAGTTTTGATGAGTATTGGCCTTCCCCTACTTTTTCGCCATCACCATCCTCATCTCCACCTACCTACATTCACAGTAGTCATATATCGAGGTCTCTTTTACGGGCCGAAAGTGAGCCACTTAGCATACCTGTATCTGATACCCCTTTGTTAACCCACAAGCAAATTTTGCCTCCTTCCCCTCCGCTTAAGGCCACAAGGCTCGGGTCTAAATCTGATAAAAGTTTGGGTTTGGGTCAGACTGGCTCAGCAGCTGAGAAGTTCTTCTCTGGGAAAGATGAAAGTGGAAGATTATTTGGGTTGAAGTTATCAACCAACAGCTCACCGCAAAGATCGTTTTCTAGAAGCTCTAGTAGGTTGTCTTACCAAGATGATTATGACGATTCTGTGTTTTCTTATCCATTTGTTGTGGATGACGATGACATAACAGATCCAGTGGCTTTGGATCATCTTCAGATTGCAGGCGACTCGAGTGCTCAGAAATTGAATATGCAACTTTGGGTTGGATTTTCTCTAAAGGCTTGGCAGAAATCAGTGTTAAGCATTGATGCTTATTCTAGAAAGTGTAGGCGTTCTTTTCCTCATTATAGTCCGCAGCAGGCTCCTCAATCCAAGAGTTATGCTTTGTTCACGACTCCTTGGGATTTGCTTGCCACTAGCCTACTTTACAGTATGGCAGATGCTGTTCAGGTGGCATATCATATGGAACAAGTGAAAAAAAAGACATCCATAAAAGTTTATACATATGCTGTGAGCAGAAGGGAGCAGACCTCTGTGGATGCAAATAGGGGTAAAATCTATGACAAGTCGAAACCCGGTTCGTTTGATCAGTCAGGGCAACAATGTGAACCACATGAGCCTGGCGGGTTTCTTCCGGTCAGAAAGTCAAAAGATGCCGAAGTTGGGGCCCTTGTTTATATGCTGAAGAAAGCCCCTCCGCTCCGCCAAGGCTTATCTGAGTCAAGAAATTTGCCTGAAGCCCCTAAGCCCGGTGAAACGTCAACCGATTGCGTCCAAGTGCAGGTCCCCGAGGCGGGGGCCGGGTCACACCAAGCAGGTACTTCTTCATCTCGTTTTGCGACCAAGACAACAGCCGATGCATTAGAAGAGCTCAAAGGGTACAAAGAGATGAAAGACTTGTTGCTTAGGCAAGGTGGAGGTCTCATATAAGTTGAAATATAAATATATACATACGTACATACAATATGGTTCAGGATTTTCTATTTTAAAGGTTAGATTTCATAAAGCTTGAAATATTTGTTAATATGATACATTTTCCTTCCA

Network for GWHGAAZE008009

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10033.10	ATG13	69	308	8.90E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08331	ATG13	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Longevity regulating pathway	map04211

Gene Ontology

GO term	Ontology	Name
GO:0006914	biological_process	autophagy
GO:1990316	cellular_component	Atg1/ULK1 kinase complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.126
	SRR3591706	second leaf	4.202
	SRR3591707	mature leaf	7.257
	SRR3591708	Shoot apex	4.507
	SRR3591709	Stem	8.469
	SRR3591710	White floral bud	4.911
	SRR3591711	White flower	8.150
	SRR3591712	Green floral bud	5.180
	SRR3591713	Yellow flower	5.861
SRP173429	SRR8316895	Juvenile bud stage	2.639
	SRR8316896	Juvenile bud stage	3.431
	SRR8316897	Juvenile bud stage	1.343
	SRR8316894	Third green stage	2.011
	SRR8316900	Third green stage	3.833
	SRR8316901	Third green stage	4.269
	SRR8316898	Complete white stage	1.990
	SRR8316899	Complete white stage	7.363
	SRR8316903	Complete white stage	3.061
	SRR8316902	Silver flowering stage	3.001
	SRR8316904	Silver flowering stage	3.115
	SRR8316905	Silver flowering stage	1.860
	SRR8316906	Gold flowering stage	7.335
	SRR8316907	Gold flowering stage	6.412
	SRR8316908	Gold flowering stage	5.181
SRP132670	SRR6706286	Control	5.099
	SRR6706287	Light intensity 50%	4.566
	SRR6706288	Light intensity 20%	5.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.265
	CNS0095593	Slightly white alabastrum(diploid) 2	3.443
	CNS0095594	Slightly white alabastrum(diploid) 3	3.769
	CNS0095595	Whole white alabastrum(diploid) 2	2.458
	CNS0095596	Whole white alabastrum(diploid) 3	3.432
	CNS0095597	Whole white alabastrum(diploid) 4	2.895
	CNS0095598	Silvery flower (diploied) 1	5.582
	CNS0095599	Silvery flower (diploied) 2	3.212
	CNS0095600	Silvery flower (diploied) 3	6.552
	CNS0095601	Golden flower (diploid) 1	3.865
	CNS0095602	Golden flower (diploid) 2	7.704
	CNS0095603	Golden flower (diploid) 3	6.410
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.362
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.139
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.150
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.153
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.506
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.546
	CNS0095610	Silvery flower (tetraploid) 1	8.064
	CNS0095611	Silvery flower (tetraploid) 2	8.207
	CNS0095612	Silvery flower (tetraploid) 3	7.117
	CNS0095613	Golden flower (tetraploid) 1	3.418
	CNS0095614	Golden flower (tetraploid) 2	6.516
	CNS0095615	Golden flower (tetraploid) 3	6.523
CRA001975	CRR073297	Stem 1	8.082
	CRR073298	Stem 2	9.667
	CRR073299	Stem 3	7.498
	CRR073300	Leaf 1	9.362
	CRR073301	Leaf 2	8.080
	CRR073302	Leaf 3	5.888
	CRR073303	Juvenile bud 1	7.322
	CRR073304	Juvenile bud 2	5.797
	CRR073305	Juvenile bud 3	12.107
	CRR073306	Third green 1	3.054
	CRR073307	Third green 2	2.692
	CRR073308	Third green 3	4.332
	CRR073309	Second white 1	4.321
	CRR073310	Second white 2	6.267
	CRR073311	Second white 3	6.028
	CRR073312	Silver flowering 1	6.836
	CRR073313	Silver flowering 2	6.517
	CRR073314	Silver flowering 3	6.281
	CRR073315	Gold flowering 1	11.281
	CRR073316	Gold flowering 2	19.338
	CRR073317	Gold flowering 3	15.237
	CRR073318	Tawny withering 1	8.305
	CRR073319	Tawny withering 2	8.147
	CRR073320	Tawny withering 3	7.582