Gene detail

Detail information of GWHGAAZE008011

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631917.1	1.9903E-115	PREDICTED: serine/threonine-protein kinase ULK3 isoform X5 [Vitis vinifera]
Swissprot	tr\|O22932\|CIPKB_ARATH	3E-46	CBL-interacting serine/threonine-protein kinase 11
trEMBL	tr\|F6I0I4\|F6I0I4_VITVI	7E-116	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60450.1}
TAIR10	AT1G49180.2	2E-73	protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	59376152	59384180	+
GWHAAZE00000002	mRNA	59376152	59384180	+
GWHAAZE00000002	exon	59376152	59376382	+
GWHAAZE00000002	exon	59380807	59380924	+
GWHAAZE00000002	exon	59381029	59381087	+
GWHAAZE00000002	exon	59381493	59381557	+
GWHAAZE00000002	exon	59381842	59381935	+
GWHAAZE00000002	exon	59382002	59382090	+
GWHAAZE00000002	exon	59384057	59384180	+
GWHAAZE00000002	CDS	59376152	59376382	+
GWHAAZE00000002	CDS	59380807	59380924	+
GWHAAZE00000002	CDS	59381029	59381087	+
GWHAAZE00000002	CDS	59381493	59381557	+
GWHAAZE00000002	CDS	59381842	59381935	+
GWHAAZE00000002	CDS	59382002	59382090	+
GWHAAZE00000002	CDS	59384057	59384180	+

Transcript Sequence
>GWHTAAZE008019 ATGACCGAGCAATTGAGCGTCGGAGAGTACGTCTTGAGGGCCAAACTCGGCGGTGGCCCACTTTCAACAGTCTGGAAAGCCGAGCACCGATCCACCGGCGATGTGGTGGCGCTAAAGCAAATCTACCTCTCTAAACTCAATCCCCACCTCCAGAATTCCTTGAATTGCGAGCTCAGCTTCTTGTCATCCATCAATCACTCCAACATCATTCGCCTTCTTCACGTTTTCCAGGCTGAAGGTTGCATTTTCCTGGTATTGGAATTCTGTGCTGGGGGGAATCTATCTTCTTACATCCTTCAACATGGCCGAGTTGAAGAATGGATTGCTAGAAGATTTATACAGCAGCTTGGAGCTGGGCTGAAGGTGCTGAACTCCCACTGCATCATCCACCGGGACTTGAAACCTGAGAACATTCTCTTATCTAGCGCTGAGAGTGATGCAGTGCTAAAGATTGCTGACTTTGGTCTCTCAAGAATATTAAATCCGGATGACTTTGCAGAGACAGTTTGTGGGTCCCCATTATACATGGCTCCAGAAATTCTACAATTTCAGAAGTACAATGCAAAGGTTGACATGTGGAGTGTGGGTGTGATTCTTTTCGAACTTCTTAATGGGTACCCACCTTTTCGTGGTCGAACCAATGTTCAGGTTGTACTGAGCCTTTGGCTGAATACAGCTGCAAATGGTTGCCTTGGAGCTCTAGCAAAAATGATGTTCTATGTTGAAGCAGTAAATGACTCATTGCCTATTGTCAGTAAAGATCAACTGCAAATTGATTGA

Network for GWHGAAZE008011

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	11	214	7.30E-61

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	Group-Pl-3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.328
	SRR3591706	second leaf	3.264
	SRR3591707	mature leaf	3.460
	SRR3591708	Shoot apex	5.411
	SRR3591709	Stem	4.927
	SRR3591710	White floral bud	5.543
	SRR3591711	White flower	4.663
	SRR3591712	Green floral bud	5.966
	SRR3591713	Yellow flower	3.900
SRP173429	SRR8316895	Juvenile bud stage	3.458
	SRR8316896	Juvenile bud stage	5.161
	SRR8316897	Juvenile bud stage	3.320
	SRR8316894	Third green stage	2.151
	SRR8316900	Third green stage	6.025
	SRR8316901	Third green stage	6.140
	SRR8316898	Complete white stage	2.475
	SRR8316899	Complete white stage	5.187
	SRR8316903	Complete white stage	3.940
	SRR8316902	Silver flowering stage	1.926
	SRR8316904	Silver flowering stage	3.354
	SRR8316905	Silver flowering stage	1.971
	SRR8316906	Gold flowering stage	6.150
	SRR8316907	Gold flowering stage	4.323
	SRR8316908	Gold flowering stage	4.372
SRP132670	SRR6706286	Control	6.124
	SRR6706287	Light intensity 50%	6.800
	SRR6706288	Light intensity 20%	7.986
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.702
	CNS0095593	Slightly white alabastrum(diploid) 2	3.442
	CNS0095594	Slightly white alabastrum(diploid) 3	2.861
	CNS0095595	Whole white alabastrum(diploid) 2	4.424
	CNS0095596	Whole white alabastrum(diploid) 3	4.397
	CNS0095597	Whole white alabastrum(diploid) 4	2.224
	CNS0095598	Silvery flower (diploied) 1	4.088
	CNS0095599	Silvery flower (diploied) 2	3.318
	CNS0095600	Silvery flower (diploied) 3	5.143
	CNS0095601	Golden flower (diploid) 1	1.957
	CNS0095602	Golden flower (diploid) 2	5.120
	CNS0095603	Golden flower (diploid) 3	4.224
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.691
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.492
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.198
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.680
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.881
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.603
	CNS0095610	Silvery flower (tetraploid) 1	7.345
	CNS0095611	Silvery flower (tetraploid) 2	5.350
	CNS0095612	Silvery flower (tetraploid) 3	5.898
	CNS0095613	Golden flower (tetraploid) 1	2.686
	CNS0095614	Golden flower (tetraploid) 2	5.139
	CNS0095615	Golden flower (tetraploid) 3	4.834
CRA001975	CRR073297	Stem 1	6.174
	CRR073298	Stem 2	4.387
	CRR073299	Stem 3	4.370
	CRR073300	Leaf 1	7.068
	CRR073301	Leaf 2	2.692
	CRR073302	Leaf 3	3.314
	CRR073303	Juvenile bud 1	4.430
	CRR073304	Juvenile bud 2	4.334
	CRR073305	Juvenile bud 3	4.226
	CRR073306	Third green 1	1.369
	CRR073307	Third green 2	2.927
	CRR073308	Third green 3	3.865
	CRR073309	Second white 1	1.282
	CRR073310	Second white 2	3.483
	CRR073311	Second white 3	4.336
	CRR073312	Silver flowering 1	2.423
	CRR073313	Silver flowering 2	1.813
	CRR073314	Silver flowering 3	2.436
	CRR073315	Gold flowering 1	1.995
	CRR073316	Gold flowering 2	1.217
	CRR073317	Gold flowering 3	1.979
	CRR073318	Tawny withering 1	2.743
	CRR073319	Tawny withering 2	2.093
	CRR073320	Tawny withering 3	1.698