Gene detail

Detail information of GWHGAAZE008012

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004243632.1	0	PREDICTED: uncharacterized oxidoreductase At1g06690, chloroplastic [Solanum lycopersicum]
Swissprot	tr\|Q94A68\|Y1669_ARATH	0	Uncharacterized oxidoreductase At1g06690, chloroplastic (Precursor)
trEMBL	tr\|M1BB01\|M1BB01_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400041157}
TAIR10	AT1G06690.1	1E-168	NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	59394700	59399579	+
GWHAAZE00000002	mRNA	59394700	59399579	+
GWHAAZE00000002	exon	59394700	59394940	+
GWHAAZE00000002	exon	59396358	59396449	+
GWHAAZE00000002	exon	59396547	59396587	+
GWHAAZE00000002	exon	59397009	59397173	+
GWHAAZE00000002	exon	59397270	59397292	+
GWHAAZE00000002	exon	59397404	59397475	+
GWHAAZE00000002	exon	59397895	59398062	+
GWHAAZE00000002	exon	59398619	59398701	+
GWHAAZE00000002	exon	59398790	59398852	+
GWHAAZE00000002	exon	59399394	59399579	+
GWHAAZE00000002	CDS	59394700	59394940	+
GWHAAZE00000002	CDS	59396358	59396449	+
GWHAAZE00000002	CDS	59396547	59396587	+
GWHAAZE00000002	CDS	59397009	59397173	+
GWHAAZE00000002	CDS	59397270	59397292	+
GWHAAZE00000002	CDS	59397404	59397475	+
GWHAAZE00000002	CDS	59397895	59398062	+
GWHAAZE00000002	CDS	59398619	59398701	+
GWHAAZE00000002	CDS	59398790	59398852	+
GWHAAZE00000002	CDS	59399394	59399579	+

Transcript Sequence
>GWHTAAZE008020 ATGGCTTTGAATTTGAGCAGTACGTGCTGCTTCAATGGGTTGAGGCAGCAGAGGAGGAAGAAGGTTGAGAGAGGAGGATTCATCCGAGCCGTAGCTTCGGAAGAATTCACGACCCTAAAAGCAGCAGAAGAAGAGAAGGATAAGGTCAAGTTGGGTGGTTCGGATTTGAAGGTGACTAGGCTCGGAATCGGAGCCTGGTCTTGGGGTGATACTAGCTACTGGAACAACTTTGATTGGGATGATAGGAAGATGAAGGCAGCCAAGGCTGCTTTTGATACCAGTGTCGATTATGGTATTACCTTCTTTGATACTGCTGAGGTTTATGGTTCAAGGCTCTCATTTGGGGCAATAAGTTCTGAAACACTTCTAGGAAGATTCATCAGCGAAAGGAAAAAAAAGAATCCCGAAGTGGATGTGGCGGTTGCAACTAAATTTGCAGCATTGCCATGGAGGCTTGGCCGTGCTAGTGTCCTCTCGGCTCTTAAGGATTCTCTAAGTCGACTTGGGCTTTCTTCAGTGGAACTCTACCAACTCCATTGGCCAGGATTGTGGGGAAATGAAGGATATATTGATGGTCTTGGAGATGCCGTTGAACAGGGCCTAGTGAAGGCTGTTGGGGTCTCTAACTATAGTGAGAAGCGGCTTCGGGATGCGTATAAGCAGCTTCAAAAGAGAGGCATACCACTAGCTTCGAATCAAGTGAATTACAGTCTGATATACAGGTTGCCTGAGCAGAATGGTGTGAAGGCTGCTTGTGATGAACTTGGGGTCTCTTTGATTGCGTACTCTCCTATTGCTCAAGGTGCTCTAACAGGAAAGTATACACCAGAAAATCCTCCAACTGGTCCCCGAGGCCGGATTTACACTCCCGAGTTCCTAACTAAGCTTCAGCCTCTGATAAATAGAATAAAGGAGATTGGGCAGAACTACAACAAAACTCCGACACAGGTAGTTCTAAATTGGTTAATAGCTCAAGAGAATGTAATACCCATACCCGGCGCCAAAAATGCTGAACAGGCCAAAGAGTTTGGTGGAGCACTCGGGTGGAGACTTACCGGTGAAGAGGTTGACGAACTTCGTTCTTTGGCTTCCGAGACAAAGCCGGTGATTGGTTTCCCAGTTGAGAAATTGTAG

Network for GWHGAAZE008012

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0042

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.22	Aldo_ket_red	60	362	2.20E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.945
	SRR3591706	second leaf	33.729
	SRR3591707	mature leaf	71.082
	SRR3591708	Shoot apex	18.156
	SRR3591709	Stem	18.813
	SRR3591710	White floral bud	54.331
	SRR3591711	White flower	100.137
	SRR3591712	Green floral bud	38.096
	SRR3591713	Yellow flower	196.329
SRP173429	SRR8316895	Juvenile bud stage	29.449
	SRR8316896	Juvenile bud stage	43.751
	SRR8316897	Juvenile bud stage	26.462
	SRR8316894	Third green stage	17.205
	SRR8316900	Third green stage	64.518
	SRR8316901	Third green stage	68.991
	SRR8316898	Complete white stage	54.190
	SRR8316899	Complete white stage	100.299
	SRR8316903	Complete white stage	57.773
	SRR8316902	Silver flowering stage	54.217
	SRR8316904	Silver flowering stage	52.754
	SRR8316905	Silver flowering stage	32.002
	SRR8316906	Gold flowering stage	123.204
	SRR8316907	Gold flowering stage	110.549
	SRR8316908	Gold flowering stage	158.995
SRP132670	SRR6706286	Control	70.708
	SRR6706287	Light intensity 50%	64.923
	SRR6706288	Light intensity 20%	69.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.569
	CNS0095593	Slightly white alabastrum(diploid) 2	45.589
	CNS0095594	Slightly white alabastrum(diploid) 3	40.977
	CNS0095595	Whole white alabastrum(diploid) 2	46.232
	CNS0095596	Whole white alabastrum(diploid) 3	44.271
	CNS0095597	Whole white alabastrum(diploid) 4	47.448
	CNS0095598	Silvery flower (diploied) 1	89.684
	CNS0095599	Silvery flower (diploied) 2	97.181
	CNS0095600	Silvery flower (diploied) 3	110.420
	CNS0095601	Golden flower (diploid) 1	120.950
	CNS0095602	Golden flower (diploid) 2	137.679
	CNS0095603	Golden flower (diploid) 3	129.791
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.744
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.221
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.833
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.151
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.928
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.047
	CNS0095610	Silvery flower (tetraploid) 1	211.246
	CNS0095611	Silvery flower (tetraploid) 2	207.381
	CNS0095612	Silvery flower (tetraploid) 3	249.086
	CNS0095613	Golden flower (tetraploid) 1	253.842
	CNS0095614	Golden flower (tetraploid) 2	250.225
	CNS0095615	Golden flower (tetraploid) 3	222.255
CRA001975	CRR073297	Stem 1	64.100
	CRR073298	Stem 2	56.982
	CRR073299	Stem 3	63.058
	CRR073300	Leaf 1	80.793
	CRR073301	Leaf 2	75.724
	CRR073302	Leaf 3	69.025
	CRR073303	Juvenile bud 1	92.616
	CRR073304	Juvenile bud 2	86.487
	CRR073305	Juvenile bud 3	79.667
	CRR073306	Third green 1	111.086
	CRR073307	Third green 2	65.457
	CRR073308	Third green 3	79.577
	CRR073309	Second white 1	85.691
	CRR073310	Second white 2	122.255
	CRR073311	Second white 3	107.223
	CRR073312	Silver flowering 1	143.320
	CRR073313	Silver flowering 2	127.812
	CRR073314	Silver flowering 3	121.876
	CRR073315	Gold flowering 1	312.363
	CRR073316	Gold flowering 2	325.124
	CRR073317	Gold flowering 3	159.067
	CRR073318	Tawny withering 1	37.238
	CRR073319	Tawny withering 2	51.414
	CRR073320	Tawny withering 3	26.365