Gene detail

Detail information of GWHGAAZE008036

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006344623.1	2.47025E-23	PREDICTED: probable linoleate 9S-lipoxygenase 5-like [Solanum tuberosum]
Swissprot	tr\|P38416\|LOXB_SOLLC	3E-22	Linoleate 9S-lipoxygenase B
trEMBL	tr\|M1CAP5\|M1CAP5_SOLTU	3E-24	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G22400.1	4E-17	PLAT/LH2 domain-containing lipoxygenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	59982999	59983157	-
GWHAAZE00000002	mRNA	59982999	59983157	-
GWHAAZE00000002	exon	59982999	59983157	-
GWHAAZE00000002	CDS	59982999	59983157	-

Transcript Sequence
>GWHTAAZE008044 ATGTTGAGAGGAACTGGAATGCTGGAGGAATGGGACAGGGTGTACGACTATGCGTATTACAATGATTTAGGAGATCCTGATAAAGGCCCTGAAACTGCACGCCCAGTTCTTGGTGGGTCGTCTGAGTACCCGTATCCTCGCAGGGGAGGAACAGGCTGA

Network for GWHGAAZE008036

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	4	52	1.00E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15718	LOX1_5	Linoleic acid metabolism	map00591

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.129
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.849
	SRR8316896	Juvenile bud stage	4.633
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	1.258
	SRR8316900	Third green stage	4.247
	SRR8316901	Third green stage	1.975
	SRR8316898	Complete white stage	0.428
	SRR8316899	Complete white stage	0.661
	SRR8316903	Complete white stage	0.823
	SRR8316902	Silver flowering stage	1.266
	SRR8316904	Silver flowering stage	2.138
	SRR8316905	Silver flowering stage	0.689
	SRR8316906	Gold flowering stage	0.384
	SRR8316907	Gold flowering stage	0.890
	SRR8316908	Gold flowering stage	0.962
SRP132670	SRR6706286	Control	2.512
	SRR6706287	Light intensity 50%	1.612
	SRR6706288	Light intensity 20%	2.554
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.254
	CNS0095593	Slightly white alabastrum(diploid) 2	0.687
	CNS0095594	Slightly white alabastrum(diploid) 3	0.827
	CNS0095595	Whole white alabastrum(diploid) 2	1.387
	CNS0095596	Whole white alabastrum(diploid) 3	0.579
	CNS0095597	Whole white alabastrum(diploid) 4	0.478
	CNS0095598	Silvery flower (diploied) 1	1.808
	CNS0095599	Silvery flower (diploied) 2	1.269
	CNS0095600	Silvery flower (diploied) 3	3.038
	CNS0095601	Golden flower (diploid) 1	0.341
	CNS0095602	Golden flower (diploid) 2	1.003
	CNS0095603	Golden flower (diploid) 3	0.499
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	6.927
	CRR073298	Stem 2	1.674
	CRR073299	Stem 3	0.885
	CRR073300	Leaf 1	2.331
	CRR073301	Leaf 2	2.678
	CRR073302	Leaf 3	1.764
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.113
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.637
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.831
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	1.772
	CRR073320	Tawny withering 3	1.114