Gene detail

Detail information of GWHGAAZE008042

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010065668.1	2.81761E-43	PREDICTED: B3 domain-containing protein REM13-like isoform X2 [Eucalyptus grandis]
Swissprot	tr\|Q9FGD2\|Y5698_ARATH	2E-24	Putative B3 domain-containing protein At5g66980
trEMBL	tr\|A0A059BBI7\|A0A059BBI7_EUCGR	2E-42	Uncharacterized protein {ECO:0000313\|EMBL:KCW63266.1}
TAIR10	AT5G66980.1	3E-22	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60035754	60044335	+
GWHAAZE00000002	mRNA	60035754	60044335	+
GWHAAZE00000002	exon	60035754	60035840	+
GWHAAZE00000002	exon	60037313	60037634	+
GWHAAZE00000002	exon	60037895	60038061	+
GWHAAZE00000002	exon	60039020	60039323	+
GWHAAZE00000002	exon	60040204	60040337	+
GWHAAZE00000002	exon	60040415	60040682	+
GWHAAZE00000002	exon	60044211	60044335	+
GWHAAZE00000002	CDS	60035754	60035840	+
GWHAAZE00000002	CDS	60037313	60037634	+
GWHAAZE00000002	CDS	60037895	60038061	+
GWHAAZE00000002	CDS	60039020	60039323	+
GWHAAZE00000002	CDS	60040204	60040337	+
GWHAAZE00000002	CDS	60040415	60040681	+
GWHAAZE00000002	three_prime_UTR	60040682	60040682	+
GWHAAZE00000002	three_prime_UTR	60044211	60044335	+

Transcript Sequence
>GWHTAAZE008050 ATGGTGAAACCTAACGGAAAATGTTACTCTGAAAAGGATTCTCAGTTCTTCAAAGTCTATGTACCTCACCATTGCTCCCAGCACCTGAGGATCCCACCAGCATTCATCAAATACTTCAAGGGTGTTTGGCCTTCCCAGTCCATACTTAAGACTTACCATGCTAAAACATCATGGTGCATTGATGTTAACAAGGTTGACAACTATTTCTTTTTTCAAAAAGGTTGGCCCGAATTTGTGCGTGATAATTCTCTAGAATTTGGAGATTTTCTAATTTTCTCCTACAGTGGTAACTCGGAATTCTATGTTCCTATATTTGGGAAAAATAACTGTAAAAAGGAGGTTCCCATTACTACTAGGGACACTGACAAACTGCAGCCAGTTCTTCAAGGGAGTAGAACTATCGAAGCTATCAAGCCCGGAAAGAAGATGTGCGTAGGTAGTACTGCAGAGATGGATACTGCTCGAATGCCATGTGAAGAGAACACTGGAGCTGTTGGAACTCCATGCAAATTTGGCTCCAAGAACCCATTCTTCCAGACTATTTTTAACCCAACTTATGTTAACTACAGGTTTATGTACATCCCATTGGAATTCATGCAGAGCTACATGTCTGCACATAGACAAACTGCTAGGCTTAAGCATTCAAATAAGTCATGGGTGGTGACGTTGATTCGCCGCGGAAAAAGACTTCTATTTTCTCGTGGATGGTTCCAATTTGTGGCAGATAACACTCTGAAAGAAGACGATGTTTGTAGGTTTGAGCTGATTCGAAGAAATAATTATGCATTCAATGTTGTTATTGTACGAGGCAGTAGGATAATTAGTCCTCGTAATAAAGCTCCAGGCACTATAACTACTCGCTCAAGCAGGAGAGAGGAAGGCAAGTCCAAAGAGATGAAAGGCCTAAACAGCAATGTTGGAGTGGCTCTGGAAGATTCTTCGTCCAAATTCATCTCCAAGCATCCTTTCTTCCAAATTGTTTTGGGTCCAACTTATGTGAGCAATGGCTTTATGAATATTCCTTCGTATTTCCGAAAGAGTTACATGATTAAACGTTGGACAACTGCTAGGCTTCGACACTCAAATAAGGGGTGGCTGGTGACTCTGAAGGGTTATGGCAGAAGGGGATTTCGTTTTTCTGCCGGTTGGAAGAAATTTGTGAAGGAAAACGGTTTGCAAGTGGGAGATGCTTGCAGTTTTGAGCTGATTAAGAAGGACAAGTATGTGTTCAAGGTGTCTATTGCTAGAGGTGTCAATAATGGCAAGCCATATAAAGTTTGAGGGACCTGGCGCAAACAGAGTCCTACAACAGCTAACCAAACAGTTAGATGAAATCTGGCTTTCCTTTTGCTTTAGGGATCTCAACTTTGCGGCTGGCTGATGATATTTTGTCTGCACACATAGCTG

Network for GWHGAAZE008042

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	16	107	3.40E-14
PF02362.22	B3	177	269	1.80E-14
PF02362.22	B3	323	413	4.90E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.752
	SRR3591706	second leaf	0.500
	SRR3591707	mature leaf	0.471
	SRR3591708	Shoot apex	2.057
	SRR3591709	Stem	0.908
	SRR3591710	White floral bud	0.185
	SRR3591711	White flower	0.632
	SRR3591712	Green floral bud	0.211
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.593
	SRR8316896	Juvenile bud stage	2.188
	SRR8316897	Juvenile bud stage	0.228
	SRR8316894	Third green stage	0.880
	SRR8316900	Third green stage	2.774
	SRR8316901	Third green stage	1.962
	SRR8316898	Complete white stage	0.953
	SRR8316899	Complete white stage	6.424
	SRR8316903	Complete white stage	0.770
	SRR8316902	Silver flowering stage	0.096
	SRR8316904	Silver flowering stage	0.914
	SRR8316905	Silver flowering stage	0.209
	SRR8316906	Gold flowering stage	0.946
	SRR8316907	Gold flowering stage	1.306
	SRR8316908	Gold flowering stage	0.598
SRP132670	SRR6706286	Control	2.044
	SRR6706287	Light intensity 50%	2.097
	SRR6706288	Light intensity 20%	1.747
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.251
	CNS0095593	Slightly white alabastrum(diploid) 2	3.127
	CNS0095594	Slightly white alabastrum(diploid) 3	4.543
	CNS0095595	Whole white alabastrum(diploid) 2	3.103
	CNS0095596	Whole white alabastrum(diploid) 3	3.782
	CNS0095597	Whole white alabastrum(diploid) 4	2.036
	CNS0095598	Silvery flower (diploied) 1	2.414
	CNS0095599	Silvery flower (diploied) 2	3.477
	CNS0095600	Silvery flower (diploied) 3	1.182
	CNS0095601	Golden flower (diploid) 1	2.889
	CNS0095602	Golden flower (diploid) 2	1.028
	CNS0095603	Golden flower (diploid) 3	1.265
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.543
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.268
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.004
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.577
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.402
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.262
	CNS0095610	Silvery flower (tetraploid) 1	0.039
	CNS0095611	Silvery flower (tetraploid) 2	0.520
	CNS0095612	Silvery flower (tetraploid) 3	0.320
	CNS0095613	Golden flower (tetraploid) 1	0.314
	CNS0095614	Golden flower (tetraploid) 2	0.040
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.220
	CRR073298	Stem 2	1.766
	CRR073299	Stem 3	1.548
	CRR073300	Leaf 1	2.127
	CRR073301	Leaf 2	1.301
	CRR073302	Leaf 3	2.071
	CRR073303	Juvenile bud 1	1.527
	CRR073304	Juvenile bud 2	0.644
	CRR073305	Juvenile bud 3	0.730
	CRR073306	Third green 1	0.166
	CRR073307	Third green 2	0.042
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.206
	CRR073310	Second white 2	0.520
	CRR073311	Second white 3	0.133
	CRR073312	Silver flowering 1	0.101
	CRR073313	Silver flowering 2	0.140
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.635
	CRR073316	Gold flowering 2	0.075
	CRR073317	Gold flowering 3	0.767
	CRR073318	Tawny withering 1	0.800
	CRR073319	Tawny withering 2	0.123
	CRR073320	Tawny withering 3	0.905