Gene detail

Detail information of GWHGAAZE008044

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW63266.1	5.85426E-72	hypothetical protein EUGRSUZ_G00890 [Eucalyptus grandis]
Swissprot	tr\|Q9FGD2\|Y5698_ARATH	3E-21	Putative B3 domain-containing protein At5g66980
trEMBL	tr\|A0A059BBI7\|A0A059BBI7_EUCGR	2E-72	Uncharacterized protein {ECO:0000313\|EMBL:KCW63266.1}
TAIR10	AT5G66980.1	1E-19	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	60060988	60072501	+
GWHAAZE00000002	mRNA	60060988	60072501	+
GWHAAZE00000002	exon	60060988	60061155	+
GWHAAZE00000002	exon	60063011	60063329	+
GWHAAZE00000002	exon	60063614	60063747	+
GWHAAZE00000002	exon	60064978	60065278	+
GWHAAZE00000002	exon	60065635	60065765	+
GWHAAZE00000002	exon	60069011	60069245	+
GWHAAZE00000002	exon	60069612	60069718	+
GWHAAZE00000002	exon	60070120	60070384	+
GWHAAZE00000002	exon	60072265	60072501	+
GWHAAZE00000002	CDS	60060988	60061155	+
GWHAAZE00000002	CDS	60063011	60063329	+
GWHAAZE00000002	CDS	60063614	60063747	+
GWHAAZE00000002	CDS	60064978	60065278	+
GWHAAZE00000002	CDS	60065635	60065765	+
GWHAAZE00000002	CDS	60069011	60069245	+
GWHAAZE00000002	CDS	60069612	60069718	+
GWHAAZE00000002	CDS	60070120	60070383	+
GWHAAZE00000002	three_prime_UTR	60070384	60070384	+
GWHAAZE00000002	three_prime_UTR	60072265	60072501	+

Transcript Sequence
>GWHTAAZE008052 ATGGTGAAAAGTAGAAGCAGAAGCAATAGGAGTAGTCCAAAGATGTCTGAATATTGTGGTTACTACTCTGAAAAGAGTCCAAAGATGTCTGAATATTGTGGTTACTACTCTGAAAAGAGTCCTCAATTCTTTAAAATGTATGTACCTCACCATTCCTCTCAATCTCTGAGGATCCCACCTGCATTCATCAAGTATTTCAAGGGGATTTTGCCTTCTAAGTCCGCACTTAGGACTCCTGCTAAAAGATCATGGTGCATTGACATGAACAAGGTTGACAACGATTTCTTCTTTCTGAAAGGTTGGCCGGAATTTGTGCGAGATAATTCATTAGTGTTCGGAGATTTTCTAGTCTTCTGCTACACTGGTAACTTGGAATTCTATGTTACTATTTTCAGGAAAAATAACTGTCAAAAGGGGGCTCTCATTACTGCTACAGACAATGATGAACCATTGTCACTGCTTCAACGGATTCAAACTGACGGCCCTTATAGCGTAGAGATGGGTACTAGTATGCCAGTTCCAGATAATATTGGGGCTTTTGAAACTCCAAGCGAATTAGGCACCAAGAAGCCTTTCTTTGAAATTGTTTTGAAGCCAACTTATGTACATACTTCGTCTATATACATTCCATCGAAGTTCGTGGAGAGCTACATGTCTACACATAGGCAGACTGCTAGGCTTACGCATTCGAATAAGTCATGGCTGGTGAGGTTGCTTCGCCGCGGAAACCTACTTGTATTTTCTTGTGGATGGAGAAAGTTTGTGGCAGATAACACTCTGCAAGAAGGAGATGTTTGCAGCTTTGAGCTGATATGTAGAAATGATTATGCATTCAATGTTGTTATTCTAAGAGGCAATGGGACGACTCCTGATAAAGCTCCGGGTACAAAAACAACTCACCCAAGCAGCAACAGAGAAGAAGGCAAGTCCAAAGTGATGGAAGGTAGTAAAAGGACAGTTGAAGCAAATATTAAAGATGCTTCCTCCAAATTCAACTCTGAGCATCCTTTCTTCCAAATTGTTTTGACTCTATCTTATATGCGCACAATTCTGAGCATTCCATCAAAATTTCAGAAGAGCTACATCAATGAACCTAGGACAACTGCGACGCTTCAGTATTCAAATAAGAGGTGGGTGGTCAACTTGATAACTTATAAAGACGGCAGAATTCTCTTTTCTGGCGGTTGGAGTAAATTCATGAAGCAAAACAGTCTGCAAATAGGAGATGTTTGCAGTTTTGAGCTGATTGAAAAGGAGAATTATGTATTCAGAGTCTCTATTCGCAGAGGGAAGTCCAAAGAGATTGGAGGTCTTGAAGATGCTTTTGGTAAATTTACCATCAAGCATCCTTTCTTTCATGTTGTTTTGAGTCCATCTTCTGTGAGCAGGCATCTGTGCATTCCGTCAAAATTTTGGACGAGTTACATTGATCAACCTAGGGCAACTGCTAGGCTTCAGTGTTCAAACAAGTGGTGGATGGTGGGCTTGAGAGGTTATCGCCACGGATCTTATTTTTTGGGTGGTTGGAGTAAATTCTCGAAGGAAAACAGCCTGCAAGTGGGAGATGATTGCTGTTTTGAGCTGATCAAGAAGGAGAACTATGTGTTCAAGGTGTCTATTGCCAGGCGTATCAATAATAGCACTCCAACTAAAGCTTGAGGAACCTCGCGCAAACAGCAGCCTCCATGATCATATGTATATATTTACATTTGTTCGCCTTTGGCAGCTTAACTGTCCACTTCGATGGAATCTGCCCTTCTTTTTGTTGTAGGAGCATTACAGCTGATATTTTGTCCGCGCATGCAGCTGGTATATATTAGTAGCTTATCTATATAAGAATGTTTGTAGGTAGTAGCTACTTAAACATGGATTCCATCGTATCATACGTGAACGAAAC

Network for GWHGAAZE008044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	43	134	3.80E-15
PF02362.22	B3	193	284	1.50E-16
PF02362.22	B3	337	429	6.00E-15
PF02362.22	B3	452	542	4.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.003
	SRR3591706	second leaf	1.444
	SRR3591707	mature leaf	0.309
	SRR3591708	Shoot apex	3.165
	SRR3591709	Stem	0.402
	SRR3591710	White floral bud	0.684
	SRR3591711	White flower	0.293
	SRR3591712	Green floral bud	1.374
	SRR3591713	Yellow flower	0.082
SRP173429	SRR8316895	Juvenile bud stage	1.395
	SRR8316896	Juvenile bud stage	1.698
	SRR8316897	Juvenile bud stage	0.035
	SRR8316894	Third green stage	1.002
	SRR8316900	Third green stage	1.084
	SRR8316901	Third green stage	1.209
	SRR8316898	Complete white stage	0.086
	SRR8316899	Complete white stage	0.845
	SRR8316903	Complete white stage	0.414
	SRR8316902	Silver flowering stage	0.074
	SRR8316904	Silver flowering stage	0.146
	SRR8316905	Silver flowering stage	0.069
	SRR8316906	Gold flowering stage	0.524
	SRR8316907	Gold flowering stage	0.180
	SRR8316908	Gold flowering stage	0.222
SRP132670	SRR6706286	Control	0.682
	SRR6706287	Light intensity 50%	0.970
	SRR6706288	Light intensity 20%	0.632
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.636
	CNS0095593	Slightly white alabastrum(diploid) 2	0.762
	CNS0095594	Slightly white alabastrum(diploid) 3	1.545
	CNS0095595	Whole white alabastrum(diploid) 2	0.797
	CNS0095596	Whole white alabastrum(diploid) 3	0.475
	CNS0095597	Whole white alabastrum(diploid) 4	1.032
	CNS0095598	Silvery flower (diploied) 1	2.919
	CNS0095599	Silvery flower (diploied) 2	2.967
	CNS0095600	Silvery flower (diploied) 3	0.547
	CNS0095601	Golden flower (diploid) 1	1.722
	CNS0095602	Golden flower (diploid) 2	0.661
	CNS0095603	Golden flower (diploid) 3	0.531
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.190
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.219
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.708
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.132
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.455
	CNS0095610	Silvery flower (tetraploid) 1	0.163
	CNS0095611	Silvery flower (tetraploid) 2	0.303
	CNS0095612	Silvery flower (tetraploid) 3	0.149
	CNS0095613	Golden flower (tetraploid) 1	0.061
	CNS0095614	Golden flower (tetraploid) 2	0.251
	CNS0095615	Golden flower (tetraploid) 3	0.193
CRA001975	CRR073297	Stem 1	2.226
	CRR073298	Stem 2	1.127
	CRR073299	Stem 3	0.458
	CRR073300	Leaf 1	1.126
	CRR073301	Leaf 2	1.150
	CRR073302	Leaf 3	0.317
	CRR073303	Juvenile bud 1	0.018
	CRR073304	Juvenile bud 2	0.023
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.001
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.119
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.287
	CRR073316	Gold flowering 2	0.730
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.004
	CRR073319	Tawny withering 2	0.092
	CRR073320	Tawny withering 3	0.028